RetrogeneDB ID: | retro_fcat_281 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:179794831..179795530(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSFCAG00000024680 | ||
Aliases: | None | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 71.37 % |
Parental protein coverage: | 80.41 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | IICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDE |
IICQIAYA..EGDMIVC.A....L....VKVGLTNY.AAYCT.L.LA..LLN.FGMDK.YEGQ.EVT.DE | |
Retrocopy | IICQIAYACREGDMIVCVALL--LSSQSVKVGLTNYVAAYCTSLPLACSLLNSFGMDKTYEGQMEVTRDE |
Parental | YNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHST-KRFPG-YDSESKEFNAEVHRK |
YNVES.DGQPG.F.CYLD.GLARTTT.NKV.GA.KGAVDGGLSI.HS..K.FPG.Y.SESKEFN.EV..K | |
Retrocopy | YNVESTDGQPGTFSCYLDTGLARTTTRNKVYGAVKGAVDGGLSILHSS<KQFPG<YSSESKEFNVEVYWK |
Parental | HIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWN |
.I.GQ.VADYM.YL...DED.YKKQFS.YI.NN.TPDMM....KKAH.AI.ENPVY..KPKK.VKK.... | |
Retrocopy | NILGQKVADYMHYLVGKDEDSYKKQFSNYIRNNITPDMM-GVFKKAHTAI*ENPVYKNKPKK*VKKR*NR |
Parental | RPK-MSLAQKKDRVAQKKASFLRAQERAAES |
.PK.MSL.QKKD.V.Q.KA.FLRA.E.AAES | |
Retrocopy | PPK<MSLVQKKD*VVQ-KARFLRA*EQAAES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 154 .37 RPM |
SRP017611_kidney | 0 .00 RPM | 701 .62 RPM |
SRP017611_liver | 0 .00 RPM | 484 .93 RPM |