RetrogeneDB ID: | retro_tsyr_952 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_25266:9364..9958(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSTSYG00000014038 | ||
Aliases: | None | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 73. % |
Parental protein coverage: | 75.67 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | IAYARIEGDVIVCAAYAHELPKYGVKVGLTNYAAAYCT-LLLARRLLNSFGMDKTYEGQVEVTGDEYNVE |
.AYA..EG...VCAAYAHELPKYGV..GL..YAAAYCT.LLLA.R.LN.FGMD..YEGQVEVT.D.Y.VE | |
Retrocopy | MAYAHREGGLRVCAAYAHELPKYGVEYGLMKYAAAYCTGLLLACRILNRFGMD*IYEGQVEVTRDVYSVE |
Parental | SVDGKAGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQN |
S.DG...AFTCYLDAGL.RTTTG..VF.ALKGAV.GGLS.PHSTK.FPGY.SESK.FNAE...KHI.GQN | |
Retrocopy | STDGQPDAFTCYLDAGLPRTTTGHNVFVALKGAVEGGLSVPHSTKQFPGYASESKRFNAEIR*KHIIGQN |
Parental | VADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKK |
VADY..YLMEE.ED.Y.K.FS.YIKNS.TPDM..E.YKKA.AA..ENPVY..KP.KEVK. | |
Retrocopy | VADYVCYLMEEVEDTYRKEFSHYIKNSITPDM--EIYKKADAAVQENPVYVRKPNKEVKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |