RetrogeneDB ID: | retro_tsyr_670 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_165708:1..539(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSTSYG00000014038 | ||
Aliases: | None | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 95.56 % |
Parental protein coverage: | 67.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IAYARIEGDVIVCAAYAHELPKYGVKVGLTNYAAAYCT-LLLARRLLNSFGMDKTYEGQVEVTGDEYNVE |
IAYARIEGDVIVCAAYAHELPKYGVKVGLTNYAAAYCT.LLLARRLLNSFGMDKTYEGQVEVTGDE..VE | |
Retrocopy | IAYARIEGDVIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNSFGMDKTYEGQVEVTGDEVTVE |
Parental | SVDGKAGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQN |
SVDGKAGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF.GYDSE.KEFNAEVHRKHIMGQN | |
Retrocopy | SVDGKAGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFHGYDSEGKEFNAEVHRKHIMGQN |
Parental | VADYMRYLMEEDEDAYKKQFSQYIKNSVTPD-MMEEMYKK |
VADYM.YLMEEDEDAYKKQFSQYIKNS.TPD.MMEEMYKK | |
Retrocopy | VADYMHYLMEEDEDAYKKQFSQYIKNSMTPD>MMEEMYKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |