RetrogeneDB ID: | retro_fcat_772 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:86698453..86698845(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000000849 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.72 % |
Parental protein coverage: | 96.99 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | NDTVTIRTRKFM-TNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTT |
N..VT..TR.FM....LLQ.KQMV.D.LH..KATVPKTEI.E..AKMYKTT..VIFV.GF.T.FGGGKT. | |
Retrocopy | NNRVTAWTRMFM<AS*LLQQKQMVLDALHLRKATVPKTEIQEEIAKMYKTTLNVIFVYGFKTYFGGGKTM |
Parental | GFGMIYDSLDYAK-KNEPKHRLARHGLYEKKKTSRKQRKERKNRM--KKVRGTAK-ANVGAGKK |
GF.MIYDSL.Y.K.KNEPKHR...................R..R....K..G..K.ANVGA.KK | |
Retrocopy | GFAMIYDSLNYEK>KNEPKHRSV*DDMVCMRRKQPQESSKRNTRTE*RKSGGLPK<ANVGASKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 44 .76 RPM |
SRP017611_kidney | 0 .00 RPM | 175 .71 RPM |
SRP017611_liver | 0 .00 RPM | 90 .88 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017818 | 17 retrocopies | |
Bos taurus | ENSBTAG00000013264 | 9 retrocopies | |
Cavia porcellus | ENSCPOG00000020096 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000000189 | 4 retrocopies | |
Felis catus | ENSFCAG00000000849 | 3 retrocopies |
retro_fcat_19, retro_fcat_772 , retro_fcat_85,
|
Homo sapiens | ENSG00000138326 | 3 retrocopies | |
Gadus morhua | ENSGMOG00000012595 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000027878 | 10 retrocopies | |
Myotis lucifugus | ENSMLUG00000024102 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000003778 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025290 | 13 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000012472 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011005 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000002666 | 10 retrocopies | |
Rattus norvegicus | ENSRNOG00000010189 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013000 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000006715 | 1 retrocopy |