RetrogeneDB ID:

retro_ggor_104

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:16:68764806..68765112(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000027363
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:ENSG00000170860
Ensembl ID:ENSGGOG00000010006
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_104
ATGGCAGACGATGTAGAACAGCAGCAAACTACCAACACTGTGGAGGACCCCCTGGATCTTAGGCTCAGCCCAGAGGAGCG
AATTTGTGTGAAAATGAGAAACAACCGAGAGCTTCGAGGCAGATTACATACTTATGATCAACATTTAAATATGATCTTGG
GAGATGTGGAAGAAACTGTGACTACTATAGAAATTGATGAGGAAACATATGAAGAGACATATGAATCAACAAAACAGAAT
ATTCCCGTGCTCTTTGTCCGGGGAGATGGCATTTTCCTGGTTGTCCCTCCACTGAGAGTTGGCTGA

ORF - retro_ggor_104 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.29 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEET
MADDV.QQQTTNTVE.PLDL.RLS..ERI.VKMRN.RELRGRLH.YDQHLNMILGDVEETVTTIEIDEET
RetrocopyMADDVEQQQTTNTVEDPLDL-RLSPEERICVKMRNNRELRGRLHTYDQHLNMILGDVEETVTTIEIDEET
ParentalYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
YEE.Y.STK.NIP.LFVRGDG..LV.PPLRVG
RetrocopyYEETYESTKQNIPVLFVRGDGIFLVVPPLRVG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .05 RPM 14 .39 RPM
SRP007412_cerebellum 0 .04 RPM 13 .99 RPM
SRP007412_heart 0 .03 RPM 8 .82 RPM
SRP007412_kidney 0 .00 RPM 65 .91 RPM
SRP007412_liver 0 .00 RPM 23 .37 RPM
SRP007412_testis 0 .00 RPM 48 .17 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_104 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_104 has 3 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_1654
Pan troglodytes retro_ptro_1125
Pongo abelii retro_pabe_1366

Parental genes homology:
Parental genes homology involve 24 parental genes, and 79 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000094053 retrocopies
Bos taurus ENSBTAG000000073631 retrocopy
Callithrix jacchus ENSCJAG000000169771 retrocopy
Cavia porcellus ENSCPOG000000066711 retrocopy
Dasypus novemcinctus ENSDNOG000000180327 retrocopies
Echinops telfairi ENSETEG000000162078 retrocopies
Gorilla gorilla ENSGGOG00000010006 4 retrocopies
Loxodonta africana ENSLAFG000000233081 retrocopy
Myotis lucifugus ENSMLUG000000106774 retrocopies
Monodelphis domestica ENSMODG000000072751 retrocopy
Mus musculus ENSMUSG000000341922 retrocopies
Nomascus leucogenys ENSNLEG000000050796 retrocopies
Oryctolagus cuniculus ENSOCUG000000110881 retrocopy
Otolemur garnettii ENSOGAG000000076596 retrocopies
Oreochromis niloticus ENSONIG000000003701 retrocopy
Pongo abelii ENSPPYG000000134024 retrocopies
Pan troglodytes ENSPTRG000000146505 retrocopies
Pteropus vampyrus ENSPVAG000000167951 retrocopy
Rattus norvegicus ENSRNOG000000087331 retrocopy
Sus scrofa ENSSSCG000000116016 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000068421 retrocopy
Tupaia belangeri ENSTBEG0000000105011 retrocopies
Tursiops truncatus ENSTTRG000000111971 retrocopy
Vicugna pacos ENSVPAG000000107092 retrocopies



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