Parental gene:

LSM3, ENSPPYG00000013402

Aliases:None
Description:LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17874]
Organism:Orangutan (Pongo abelii)
Coordinates:3:1648894..1674093(+)


>ENSPPYG00000013402
ATGGCGGACGACGTAGACCAGCAACAAACTACCAACACTGTAGAGGAGCCCCTGGATCTTATCAGGCTCAGCTTAGATGA
GCGAATTTATGTGAAAATGAGAAATGACCGAGAACTTCGAGGCAGATTACATGCTTATGATCAACATTTAAATATGATCT
TGGGAGATGTGGAAGAAACTGTGACTACTATAGAAATTGATGAAGAAACATATGAAGAGATATATAAATCAACGAAACGG
AATATTCCAATGCTCTTTGTCCGGGGAGATGGCGTTGTCCTGGTTGCCCCTCCACTGAGAGTTGGCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 9 .51 RPM
SRP007412_cerebellum 11 .19 RPM
SRP007412_heart 11 .26 RPM
SRP007412_kidney 21 .48 RPM
SRP007412_liver 12 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009405 ortholog_one2one 3 retrogenes
retro_amel_1756, retro_amel_659, retro_amel_838,
Bos taurus ENSBTAG00000007363 ortholog_one2one 1 retrogene
retro_btau_1732,
Callithrix jacchus ENSCJAG00000016977 ortholog_one2many 1 retrogene
retro_cjac_54,
Cavia porcellus ENSCPOG00000006671 ortholog_one2one 1 retrogene
retro_cpor_1445,
Dasypus novemcinctus ENSDNOG00000018032 ortholog_one2one 7 retrogenes
retro_dnov_1046, retro_dnov_135, retro_dnov_1728, retro_dnov_1818, retro_dnov_229, retro_dnov_230, retro_dnov_2408,
Echinops telfairi ENSETEG00000016207 ortholog_one2one 8 retrogenes
retro_etel_117, retro_etel_1678, retro_etel_1852, retro_etel_2131, retro_etel_472, retro_etel_521, retro_etel_598, retro_etel_833,
Homo sapiens ENSG00000170860 ortholog_one2one 5 retrogenes
retro_hsap_1045, retro_hsap_1654, retro_hsap_1839, retro_hsap_2286, retro_hsap_2986,
Gorilla gorilla ENSGGOG00000010006 ortholog_one2many 4 retrogenes
retro_ggor_104, retro_ggor_1699, retro_ggor_2068, retro_ggor_826,
Loxodonta africana ENSLAFG00000023308 ortholog_one2one 1 retrogene
retro_lafr_1013,
Myotis lucifugus ENSMLUG00000010677 ortholog_one2one 4 retrogenes
retro_mluc_1148, retro_mluc_2306, retro_mluc_2337, retro_mluc_25,
Macaca mulatta ENSMMUG00000023126 ortholog_one2one 5 retrogenes
retro_mmul_1038, retro_mmul_1657, retro_mmul_1908, retro_mmul_554, retro_mmul_828,
Mus musculus ENSMUSG00000034192 ortholog_one2one 2 retrogenes
retro_mmus_1390, retro_mmus_2446,
Nomascus leucogenys ENSNLEG00000005079 ortholog_one2one 6 retrogenes
retro_nleu_1138, retro_nleu_2934, retro_nleu_347, retro_nleu_739, retro_nleu_916, retro_nleu_958,
Oryctolagus cuniculus ENSOCUG00000011088 possible_ortholog 1 retrogene
retro_ocun_126,
Otolemur garnettii ENSOGAG00000007659 ortholog_one2one 6 retrogenes
retro_ogar_1031, retro_ogar_231, retro_ogar_242, retro_ogar_2490, retro_ogar_2818, retro_ogar_577,
Oreochromis niloticus ENSONIG00000000370 ortholog_one2many 1 retrogene
retro_onil_12,
Pan troglodytes ENSPTRG00000014650 ortholog_one2one 5 retrogenes
retro_ptro_1125, retro_ptro_1161, retro_ptro_1619, retro_ptro_2020, retro_ptro_712,
Pteropus vampyrus ENSPVAG00000016795 ortholog_one2one 1 retrogene
retro_pvam_646,
Rattus norvegicus ENSRNOG00000008733 ortholog_one2one 1 retrogene
retro_rnor_1187,
Sus scrofa ENSSSCG00000011601 possible_ortholog 6 retrogenes
retro_sscr_1134, retro_sscr_1140, retro_sscr_395, retro_sscr_396, retro_sscr_457, retro_sscr_64,
Ictidomys tridecemlineatus ENSSTOG00000006842 ortholog_one2one 1 retrogene
retro_itri_613,
Tupaia belangeri ENSTBEG00000001050 ortholog_one2one 11 retrogenes
retro_tbel_1034, retro_tbel_1343, retro_tbel_2860, retro_tbel_2969, retro_tbel_3184, retro_tbel_331, retro_tbel_3422, retro_tbel_3457, retro_tbel_414, retro_tbel_4663, retro_tbel_794,
Tursiops truncatus ENSTTRG00000011197 ortholog_one2one 1 retrogene
retro_ttru_601,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_874 83.15 87.25
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2. retro_pabe_1366 87.38 100.00
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3. retro_pabe_1936 91.26 100.00
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4. retro_pabe_2475 74.74 92.16
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Download FASTA sequences of all ENSPPYG00000013402 retrocopies