Parental gene:

LSM3, ENSCJAG00000016977

Aliases:None
Description:LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17874]
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:66008561..66022233(+)


>ENSCJAG00000016977
ATGGCGGACGACGTAGACCAGCAACAAACTACCAACACTGTAGAGGAGCCCCTGGATCTTATCCGGCTCAGCCTAGATGA
GCGAATTTATGTGAAAATGAGAAATGACCGAGAGCTTCGAGGCAGATTACACGCTTATGATCAACATTTAAATATGATCT
TAGGAGATGTAGAAGAAACTGTGACTACTATAGAAATTGATGAAGAAACATATGAAGAGATATATAAATCAACGAAACGA
AATATTCCAATGCTCTTCGTCCGGGGAGATGGCGTTGTACTGGTTGCCCCTCCGCTGAGAGTTGGCTGA

Library Parental gene expression (RPM)
SRP051959_colon 6 .68 RPM
SRP051959_heart 6 .81 RPM
SRP051959_kidney 12 .96 RPM
SRP051959_liver 19 .84 RPM
SRP051959_lung 7 .87 RPM
SRP051959_lymph_node 6 .71 RPM
SRP051959_skeletal_muscle 7 .16 RPM
SRP051959_spleen 6 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009405 possible_ortholog 3 retrogenes
retro_amel_1756, retro_amel_659, retro_amel_838,
Bos taurus ENSBTAG00000007363 ortholog_one2many 1 retrogene
retro_btau_1732,
Cavia porcellus ENSCPOG00000006671 ortholog_one2many 1 retrogene
retro_cpor_1445,
Dasypus novemcinctus ENSDNOG00000018032 ortholog_one2many 7 retrogenes
retro_dnov_1046, retro_dnov_135, retro_dnov_1728, retro_dnov_1818, retro_dnov_229, retro_dnov_230, retro_dnov_2408,
Echinops telfairi ENSETEG00000016207 ortholog_one2many 8 retrogenes
retro_etel_117, retro_etel_1678, retro_etel_1852, retro_etel_2131, retro_etel_472, retro_etel_521, retro_etel_598, retro_etel_833,
Homo sapiens ENSG00000170860 ortholog_one2one 5 retrogenes
retro_hsap_1045, retro_hsap_1654, retro_hsap_1839, retro_hsap_2286, retro_hsap_2986,
Gorilla gorilla ENSGGOG00000010006 possible_ortholog 4 retrogenes
retro_ggor_104, retro_ggor_1699, retro_ggor_2068, retro_ggor_826,
Loxodonta africana ENSLAFG00000023308 ortholog_one2many 1 retrogene
retro_lafr_1013,
Myotis lucifugus ENSMLUG00000010677 possible_ortholog 4 retrogenes
retro_mluc_1148, retro_mluc_2306, retro_mluc_2337, retro_mluc_25,
Macaca mulatta ENSMMUG00000023126 ortholog_one2one 5 retrogenes
retro_mmul_1038, retro_mmul_1657, retro_mmul_1908, retro_mmul_554, retro_mmul_828,
Monodelphis domestica ENSMODG00000007275 possible_ortholog 1 retrogene
retro_mdom_800,
Mus musculus ENSMUSG00000034192 possible_ortholog 2 retrogenes
retro_mmus_1390, retro_mmus_2446,
Nomascus leucogenys ENSNLEG00000005079 possible_ortholog 6 retrogenes
retro_nleu_1138, retro_nleu_2934, retro_nleu_347, retro_nleu_739, retro_nleu_916, retro_nleu_958,
Oryctolagus cuniculus ENSOCUG00000011088 possible_ortholog 1 retrogene
retro_ocun_126,
Otolemur garnettii ENSOGAG00000007659 possible_ortholog 6 retrogenes
retro_ogar_1031, retro_ogar_231, retro_ogar_242, retro_ogar_2490, retro_ogar_2818, retro_ogar_577,
Oreochromis niloticus ENSONIG00000000370 ortholog_many2many 1 retrogene
retro_onil_12,
Pongo abelii ENSPPYG00000013402 ortholog_one2many 4 retrogenes
retro_pabe_1366, retro_pabe_1936, retro_pabe_2475, retro_pabe_874,
Pan troglodytes ENSPTRG00000014650 ortholog_one2many 5 retrogenes
retro_ptro_1125, retro_ptro_1161, retro_ptro_1619, retro_ptro_2020, retro_ptro_712,
Pteropus vampyrus ENSPVAG00000016795 possible_ortholog 1 retrogene
retro_pvam_646,
Rattus norvegicus ENSRNOG00000008733 ortholog_one2many 1 retrogene
retro_rnor_1187,
Sus scrofa ENSSSCG00000011601 possible_ortholog 6 retrogenes
retro_sscr_1134, retro_sscr_1140, retro_sscr_395, retro_sscr_396, retro_sscr_457, retro_sscr_64,
Ictidomys tridecemlineatus ENSSTOG00000006842 possible_ortholog 1 retrogene
retro_itri_613,
Tupaia belangeri ENSTBEG00000001050 possible_ortholog 11 retrogenes
retro_tbel_1034, retro_tbel_1343, retro_tbel_2860, retro_tbel_2969, retro_tbel_3184, retro_tbel_331, retro_tbel_3422, retro_tbel_3457, retro_tbel_414, retro_tbel_4663, retro_tbel_794,
Tursiops truncatus ENSTTRG00000011197 ortholog_one2many 1 retrogene
retro_ttru_601,
Vicugna pacos ENSVPAG00000010709 possible_ortholog 2 retrogenes
retro_vpac_121, retro_vpac_397,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_54 99.02 100.00
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Download FASTA sequences of all ENSCJAG00000016977 retrocopies