Parental gene: | LSM3, ENSPTRG00000014650 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 3:14391570..14410892(+) |
>ENSPTRG00000014650
ATGGCGGACGACGTAGACCAGCAACAAACTACCAACACTGTAGAGGAGCCCCTGGATCTTATCAGGCTCAGCCTAGATGA
GCGAATTTATGTGAAAATGAGAAATGACCGAGAGCTTCGAGGCAGATTACATGCTTATGATCAACATTTAAATATGATCT
TGGGAGATGTGGAAGAAACTGTGACTACTATAGAAATTGATGAAGAAACATATGAAGAGATATATAAATCAACGAAACGG
AATATTCCAATGCTCTTTGTCCGGGGAGATGGCGTTGTCCTGGTTGCCCCTCCACTGAGAGTTGGCTGA
ATGGCGGACGACGTAGACCAGCAACAAACTACCAACACTGTAGAGGAGCCCCTGGATCTTATCAGGCTCAGCCTAGATGA
GCGAATTTATGTGAAAATGAGAAATGACCGAGAGCTTCGAGGCAGATTACATGCTTATGATCAACATTTAAATATGATCT
TGGGAGATGTGGAAGAAACTGTGACTACTATAGAAATTGATGAAGAAACATATGAAGAGATATATAAATCAACGAAACGG
AATATTCCAATGCTCTTTGTCCGGGGAGATGGCGTTGTCCTGGTTGCCCCTCCACTGAGAGTTGGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 12 .91 RPM |
| SRP007412_cerebellum | 12 .30 RPM |
| SRP007412_heart | 23 .58 RPM |
| SRP007412_kidney | 39 .41 RPM |
| SRP007412_liver | 18 .63 RPM |
| SRP007412_testis | 53 .22 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009405 | ortholog_one2one | 3 retrogenes | |
| Bos taurus | ENSBTAG00000007363 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000016977 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000006671 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000018032 | ortholog_one2one | 7 retrogenes | |
| Echinops telfairi | ENSETEG00000016207 | ortholog_one2one | 8 retrogenes | |
| Homo sapiens | ENSG00000170860 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000010006 | ortholog_one2many | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000023308 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000010677 | ortholog_one2one | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000023126 | ortholog_one2one | 5 retrogenes | |
| Mus musculus | ENSMUSG00000034192 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005079 | ortholog_one2one | 6 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000011088 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000007659 | ortholog_one2one | 6 retrogenes | |
| Oreochromis niloticus | ENSONIG00000000370 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000013402 | ortholog_one2one | 4 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000016795 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000008733 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000011601 | possible_ortholog | 6 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000006842 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000001050 | ortholog_one2one | 11 retrogenes | |
| Tursiops truncatus | ENSTTRG00000011197 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_712 | 82.42 | 89.22 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1125 | 85.15 | 99.02 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_1161 | 65.09 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_1619 | 92.23 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_2020 | 74.76 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000014650 retrocopies