RetrogeneDB ID: retro_ggor_1134

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 15:13586322..13586877(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSGGOG00000025647
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ANP32A
• Ensembl ID: ENSGGOG00000015417
• Aliases: None
• Description: None

Sequence

>retro_ggor_1134
ATGAAGATGGGCAGACGGATTCATTTAGAGCTGCGGAACAGGACGCCCTCTGATGTGAAAGAACTTGTCCTGGACAACAG
TCGGTCGAATGAAGGCAAAATCGAAGGCCTCACAGATGAATCTGAATAACTGGAATTCTTAAGTGCAATCAACGTAGGCC
TCACCTGAATTGCAAACTTACCAAAGTTAAACAAACTTAAGAAGCTTGAACTAAGCGATAACAGAGTCTCGGGGGGCGTG
GAAGCATTGGCAGAAAAGTGTCCAAACCTCACGCATCTAAATTTATGTGGCAACAAAATTAAAGACCTCTGCACAACAGA
GCCACTGAAAAACTTAGAAAACCTCAAGAGCTTAGACCTTTTCAATTGCGAGGTAACCAACCTGAATGACTACTGAGAAA
ATGTGCTCAAGCTCCTCCTGCAACTCACATATCTCGACGGCTATGACCAGGACGACAAGGAGGCCCCTAACTTGGATGCT
GAGGGCTACGTGGAGGGCCTGGATGAGGAGGAGGAGGATGAGGATGAGGAGGAGTCTGACAAAGATGCTCAGGTA

Alignment

ORF - retro_ggor_1134 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.08 %
• Parental protein coverage: 74.3 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEMGRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLE
          M.MGRRIHLELRNRTPSDVKELVLDNSRSNEGK.EGLTDE.E.LEFLS.INVGLT.IANLPKLNKLKKLE
Retrocopy MKMGRRIHLELRNRTPSDVKELVLDNSRSNEGKIEGLTDESE*LEFLSAINVGLT*IANLPKLNKLKKLE

Parental  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP
          LSDNRVSGG.E.LAEKCPNLTHLNL.GNKIKDL.T.EPLK.LENLKSLDLFNCEVTNLNDY.ENV.KLL.
Retrocopy LSDNRVSGGVEALAEKCPNLTHLNLCGNKIKDLCTTEPLKNLENLKSLDLFNCEVTNLNDY*ENVLKLLL

Parental  QLTYLDGYDRDDKEAPDSDAEGYVEGLDDEEEDEDEEEYDEDAQV
          QLTYLDGYD.DDKEAP..DAEGY................D.DAQV
Retrocopy QLTYLDGYDQDDKEAPNLDAEGYXXXXXXXXXXXXXXXSDKDAQV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.05 RPM	96.68 RPM
SRP007412_cerebellum	0.00 RPM	130.33 RPM
SRP007412_heart	0.03 RPM	63.82 RPM
SRP007412_kidney	0.04 RPM	107.09 RPM
SRP007412_liver	0.05 RPM	49.83 RPM
SRP007412_testis	0.00 RPM	36.57 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1134 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1134 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 14 parental genes, and 25 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000002339	2 retrocopies	retro_cjac_3305, retro_cjac_3799,
Dasypus novemcinctus	ENSDNOG00000015360	5 retrocopies	retro_dnov_1199, retro_dnov_1250, retro_dnov_1696, retro_dnov_836, retro_dnov_956,
Dipodomys ordii	ENSDORG00000008611	1 retrocopy	retro_dord_240,
Felis catus	ENSFCAG00000015773	1 retrocopy	retro_fcat_1188,
Homo sapiens	ENSG00000140350	3 retrocopies	retro_hsap_1479, retro_hsap_3117, retro_hsap_48,
Gorilla gorilla	ENSGGOG00000015417	1 retrocopy	retro_ggor_1134 ,
Loxodonta africana	ENSLAFG00000022560	1 retrocopy	retro_lafr_679,
Nomascus leucogenys	ENSNLEG00000013347	2 retrocopies	retro_nleu_15, retro_nleu_2383,
Otolemur garnettii	ENSOGAG00000003058	1 retrocopy	retro_ogar_2596,
Ochotona princeps	ENSOPRG00000015394	2 retrocopies	retro_opri_302, retro_opri_563,
Pan troglodytes	ENSPTRG00000007219	2 retrocopies	retro_ptro_2108, retro_ptro_758,
Rattus norvegicus	ENSRNOG00000045651	1 retrocopy	retro_rnor_1043,
Sarcophilus harrisii	ENSSHAG00000010906	1 retrocopy	retro_shar_540,
Tupaia belangeri	ENSTBEG00000016417	2 retrocopies	retro_tbel_4078, retro_tbel_4595,