Parental gene:

ANP32A, ENSCJAG00000002339

Aliases:None
Description:acidic (leucine-rich) nuclear phosphoprotein 32 family, member A [Source:HGNC Symbol;Acc:13233]
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:11368395..11408470(-)


>ENSCJAG00000002339
ATGGAGATGGGCAGACGGATTCATTTAGAGCTGCGGAACAGGACGCCCTCTGATGTGAAAGAACTTGTCCTGGACAACAG
TCGGTCGAATGAAGGCAAACTCGAAGGCCTCACAGATGAATTTGAAGAACTGGAATTCTTAAGTACAATCAACGTAGGCC
TCACCTCAATCGCAAACTTACCAAAGTTAAACAAACTTAAGAAGCTTGAACTAAGCGATAACAGAGTCTCAGGGGGCCTG
GAAGTATTGGCAGAAAAGTGTCCGAACCTCACACATCTAAATTTAAGTGGCAACAAAATTAAAGACCTCAGCACAATAGA
GCCACTGAAAAAGTTAGAAAACCTCAAGAGCTTAGACCTTTTCAATTGCGAGGTAACCAACCTGAATGACTATCGAGAAA
ATGTGTTCAAGCTCCTCCCGCAACTCACATATCTCGACGGCTATGACCGGGACGACAAGGAGGCCCCTGACTCGGATGCT
GAGGGCTACGTGGAGGGCCTGGATGATGAGGAGGAAGATGAGGATGAGGAGGAATATGATGAAGATGCTCAGGTAGTGGA
AGACGAGGAGGACGAGGATGAGGAGGAAGAAGGTGAAGAGGAGGACGTGAGTGGAGAGGAGGAGGAGGATGAAGAAGGTT
ATAATGATGGAGAGGTAGATGACGAGGAAGATGAAGAAGAGCTTGGTGAAGAAGAAAGGGGTCAGAAGCGAAAACGAGAA
CCTGAAGATGAGGGAGAAGATGACGACTAA

Library Parental gene expression (RPM)
SRP051959_spleen 23 .40 RPM
SRP051959_skeletal_muscle 13 .58 RPM
SRP051959_lymph_node 26 .64 RPM
SRP051959_lung 30 .13 RPM
SRP051959_liver 10 .14 RPM
SRP051959_kidney 22 .34 RPM
SRP051959_heart 24 .21 RPM
SRP051959_colon 12 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009710 within_species_paralog 1 retrogene
retro_cjac_2926,
Dasypus novemcinctus ENSDNOG00000015360 possible_ortholog 5 retrogenes
retro_dnov_1199, retro_dnov_1250, retro_dnov_1696, retro_dnov_836, retro_dnov_956,
Dipodomys ordii ENSDORG00000008611 ortholog_one2many 1 retrogene
retro_dord_240,
Felis catus ENSFCAG00000015773 possible_ortholog 1 retrogene
retro_fcat_1188,
Homo sapiens ENSG00000140350 ortholog_one2one 3 retrogenes
retro_hsap_1479, retro_hsap_3117, retro_hsap_48,
Gorilla gorilla ENSGGOG00000015417 ortholog_one2one 1 retrogene
retro_ggor_1134,
Loxodonta africana ENSLAFG00000022560 ortholog_one2many 1 retrogene
retro_lafr_679,
Macaca mulatta ENSMMUG00000022717 possible_ortholog 1 retrogene
retro_mmul_1985,
Nomascus leucogenys ENSNLEG00000013347 ortholog_one2one 2 retrogenes
retro_nleu_15, retro_nleu_2383,
Otolemur garnettii ENSOGAG00000003058 possible_ortholog 1 retrogene
retro_ogar_2596,
Ochotona princeps ENSOPRG00000015394 possible_ortholog 2 retrogenes
retro_opri_302, retro_opri_563,
Pongo abelii ENSPPYG00000006595 possible_ortholog 2 retrogenes
retro_pabe_210, retro_pabe_2575,
Pan troglodytes ENSPTRG00000007219 ortholog_one2one 2 retrogenes
retro_ptro_2108, retro_ptro_758,
Rattus norvegicus ENSRNOG00000045651 possible_ortholog 1 retrogene
retro_rnor_1043,
Sarcophilus harrisii ENSSHAG00000010906 ortholog_one2many 1 retrogene
retro_shar_540,
Tupaia belangeri ENSTBEG00000016417 possible_ortholog 2 retrogenes
retro_tbel_4078, retro_tbel_4595,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3305 92.77 100.00
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2. retro_cjac_3799 61.27 81.12
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Download FASTA sequences of all ENSCJAG00000002339 retrocopies