RetrogeneDB ID: | retro_ggor_247 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:64066377..64066674(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000023722 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HBXIP | ||
Ensembl ID: | ENSGGOG00000016522 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.13 % |
Parental protein coverage: | 58.38 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GSEPGWSVGGMEATLEQHLEDTMKNPSIVGVLCTDSQGLNLGCRGTLSDEHAGVISVLAQQAAKLTSDPT |
GS.PGW.VGGMEATLEQ.LEDTMKNPSIVGV.CTDS..LNLGC.GTLSDEHAGVIS.LAQQAAKLTSDPT | |
Retrocopy | GSGPGWTVGGMEATLEQRLEDTMKNPSIVGVPCTDS--LNLGCHGTLSDEHAGVISLLAQQAAKLTSDPT |
Parental | DIPVVCLESDNGNIMIQKHDGITVAVHKMAS |
D.PVVC..SDNGNIMIQK.DG.TVAVHKMAS | |
Retrocopy | DTPVVCPASDNGNIMIQKRDGFTVAVHKMAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 40 .33 RPM |
SRP007412_cerebellum | 0 .12 RPM | 35 .50 RPM |
SRP007412_heart | 0 .03 RPM | 38 .65 RPM |
SRP007412_kidney | 0 .25 RPM | 321 .55 RPM |
SRP007412_liver | 0 .00 RPM | 32 .08 RPM |
SRP007412_testis | 0 .00 RPM | 42 .17 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_162 |
Pan troglodytes | retro_ptro_155 |
Macaca mulatta | retro_mmul_164 |