Parental gene:

LAMTOR5, ENSCJAG00000003438

Aliases:None
Description:late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 [Source:HGNC Symbol;Acc:17955]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:146293474..146299658(-)


>ENSCJAG00000003438
GAGCCACGCGCGGGTCACGACTGTCACCGCGCGGGCAGCCCAAGCCTTCGCCAGGCTCTGTGCGGCGGAAGCGCAGCGAT
GTTTTCCAGTAAAAAACGCGGACGTTGCGCCGTGATCAATTTTGTCCCTTTGGAGGCGCCGTTCCGGTCCACGCCCCGCT
CGCGTCAAGTGACTGAGGCCTGTGGTGGAGTCGGACGCGGCGTGCCGCTGGGTTCTGGGCCGGGGTGGACGGTGGGTGGG
ATGGAGGCGACCTTGGAGCAGCACTTGGAAGACACAATGAAGAATCCCTCCATTGTTGGAGTCCTGTGCACAGATTCACA
AGGACTTAATCTGGGTTGCCGTGGGACCCTGTCAGATGAGCATGCTGGAGTGATATCTGTCCTAGCCCAGCAAGCAGCTA
AGCTAACCTCTGACCCCACTGATATTCCTGTGGTGTGCCTAGAATCAGATAATGGGAACATTATGATCCAGAAACACGAT
GGCATCACAGTGGCAGTGCACAAAATGGCCTCTTGA

Library Parental gene expression (RPM)
SRP051959_spleen 6 .18 RPM
SRP051959_skeletal_muscle 12 .88 RPM
SRP051959_lymph_node 5 .14 RPM
SRP051959_lung 6 .25 RPM
SRP051959_liver 4 .79 RPM
SRP051959_kidney 14 .04 RPM
SRP051959_heart 7 .00 RPM
SRP051959_colon 3 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011504 ortholog_one2one 2 retrogenes
retro_amel_118, retro_amel_974,
Bos taurus ENSBTAG00000014970 ortholog_one2many 3 retrogenes
retro_btau_1505, retro_btau_1755, retro_btau_71,
Dipodomys ordii ENSDORG00000005672 ortholog_one2one 3 retrogenes
retro_dord_147, retro_dord_642, retro_dord_775,
Equus caballus ENSECAG00000021821 ortholog_one2one 1 retrogene
retro_ecab_1026,
Homo sapiens ENSG00000134248 ortholog_one2one 1 retrogene
retro_hsap_162,
Gorilla gorilla ENSGGOG00000016522 ortholog_one2one 1 retrogene
retro_ggor_247,
Microcebus murinus ENSMICG00000005264 ortholog_one2one 4 retrogenes
retro_mmur_1114, retro_mmur_152, retro_mmur_422, retro_mmur_454,
Myotis lucifugus ENSMLUG00000007198 ortholog_one2one 2 retrogenes
retro_mluc_512, retro_mluc_708,
Macaca mulatta ENSMMUG00000015023 ortholog_one2many 4 retrogenes
retro_mmul_164, retro_mmul_2452, retro_mmul_440, retro_mmul_499,
Mustela putorius furo ENSMPUG00000003833 ortholog_one2one 5 retrogenes
retro_mputfur_1013, retro_mputfur_1020, retro_mputfur_1187, retro_mputfur_1387, retro_mputfur_921,
Mus musculus ENSMUSG00000087260 ortholog_one2one 3 retrogenes
retro_mmus_1061, retro_mmus_1901, retro_mmus_3723,
Oryctolagus cuniculus ENSOCUG00000002449 ortholog_one2one 2 retrogenes
retro_ocun_1880, retro_ocun_356,
Otolemur garnettii ENSOGAG00000033478 ortholog_one2one 2 retrogenes
retro_ogar_1388, retro_ogar_3454,
Ochotona princeps ENSOPRG00000004283 ortholog_one2one 5 retrogenes
retro_opri_138, retro_opri_199, retro_opri_488, retro_opri_567, retro_opri_716,
Pan troglodytes ENSPTRG00000001078 ortholog_one2one 2 retrogenes
retro_ptro_155, retro_ptro_436,
Sus scrofa ENSSSCG00000006807 possible_ortholog 1 retrogene
retro_sscr_986,
Ictidomys tridecemlineatus ENSSTOG00000003401 ortholog_one2many 5 retrogenes
retro_itri_1196, retro_itri_154, retro_itri_198, retro_itri_587, retro_itri_86,
Tupaia belangeri ENSTBEG00000009117 ortholog_one2one 5 retrogenes
retro_tbel_1220, retro_tbel_1427, retro_tbel_1756, retro_tbel_2289, retro_tbel_2329,
Tarsius syrichta ENSTSYG00000006011 ortholog_one2one 5 retrogenes
retro_tsyr_305, retro_tsyr_306, retro_tsyr_318, retro_tsyr_560, retro_tsyr_870,
Tursiops truncatus ENSTTRG00000001319 ortholog_one2one 1 retrogene
retro_ttru_602,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2918 78.72 54.39
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Download FASTA sequences of all ENSCJAG00000003438 retrocopies