RetrogeneDB ID: | retro_ocun_1880 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:33130010..33130283(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LAMTOR5 | ||
Ensembl ID: | ENSOCUG00000002449 | ||
Aliases: | None | ||
Description: | late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 [Source:HGNC Symbol;Acc:17955] |
Percent Identity: | 85.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEATLEQHLEDTMKNPSIVGVLCTDSQGLNLGCRGTLSDEHAGVISVLAQQAAKLTSDPTDIPVVCLESD |
.E.TL.QH.EDTMKNPSI.GV.C.DSQGLNLG..G.LSDEHAGVISVLA.QAAKLTSDPTD.PVVCLESD | |
Retrocopy | VETTLKQHVEDTMKNPSIIGVTCADSQGLNLGRLGLLSDEHAGVISVLAWQAAKLTSDPTDTPVVCLESD |
Parental | NGNIMIQKHDGITVAVHKMAS |
NGNIMIQKH.GITVAVHKMAS | |
Retrocopy | NGNIMIQKHNGITVAVHKMAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 34 .38 RPM |
SRP017611_kidney | 0 .00 RPM | 45 .91 RPM |
SRP017611_liver | 0 .00 RPM | 6 .71 RPM |