RetrogeneDB ID: | retro_ggor_505 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 10:40429843..40430099(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000170540 | ||
Ensembl ID: | ENSGGOG00000002902 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.36 % |
Parental protein coverage: | 52.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LADY-LVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAVGWWKRLFTLKEEKPKMYFMTMIISLAA |
LADY.L.P....RIFGSNK.TTEQQQRFHEICSNLVKTRRRAVGWWK.LFTLKEEKPKMYFMTMIISLA. | |
Retrocopy | LADY>LFPFWC-RIFGSNKCTTEQQQRFHEICSNLVKTRRRAVGWWKHLFTLKEEKPKMYFMTMIISLAE |
Parental | VAWVGQQVHNLLLTYLI |
VA.VGQQVHNLLLT.LI | |
Retrocopy | VA*VGQQVHNLLLTCLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .29 RPM | 125 .50 RPM |
SRP007412_cerebellum | 0 .12 RPM | 53 .46 RPM |
SRP007412_heart | 0 .00 RPM | 5 .07 RPM |
SRP007412_kidney | 0 .08 RPM | 18 .11 RPM |
SRP007412_liver | 0 .03 RPM | 26 .96 RPM |
SRP007412_testis | 0 .21 RPM | 77 .49 RPM |