RetrogeneDB ID: | retro_cfam_127 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 17:58620202..58620592(+) | ||
Located in intron of: | ENSCAFG00000011208 | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000024445 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSCAFG00000018174 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein S15a (RPS15A), mRNA. [Source:RefSeq mRNA;Acc:NM_001252147] |
Percent Identity: | 96.12 % |
Parental protein coverage: | 99.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLN |
MV.MNVLADALKS.NNAEKRGKRQVLIRPCSKVI.RFLTVMMKHGYIG.FEIIDDHRAGKIVVNLTGRLN | |
Retrocopy | MVCMNVLADALKSVNNAEKRGKRQVLIRPCSKVIIRFLTVMMKHGYIGDFEIIDDHRAGKIVVNLTGRLN |
Parental | KCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFF |
KCGVISPRFDVQLKDLEKWQNNLLPSRQFGFI.LTTSAGIMDHEEARRKHTGGKILGFF | |
Retrocopy | KCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIILTTSAGIMDHEEARRKHTGGKILGFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 130 .57 RPM |
SRP017611_brain | 0 .00 RPM | 58 .19 RPM |
SRP017611_kidney | 0 .33 RPM | 455 .13 RPM |
SRP017611_liver | 0 .00 RPM | 125 .88 RPM |