Parental gene:

RPS15A, ENSCAFG00000018174

Aliases:None
Description:Canis lupus familiaris ribosomal protein S15a (RPS15A), mRNA. [Source:RefSeq mRNA;Acc:NM_001252147]
Organism:Dog (Canis familiaris)
Coordinates:6:26309072..26329529(+)


>ENSCAFG00000018174
ATGGCGGAGGGAGATAATCGCAGCACCAACCTCCTGGCTGCAGAGACTGCAAGTCTGGAAGAGCAGCTGCAGGGATGGGG
AGAAGTGATGCTGATGGCTGATAAAGTCCTCAGATGGGAAAGAGCCTGGTTTCCACCTGCCATCATGGGTGTGGTTTCTT
TGCTGTTTCTGACTATCTACTATCTAGATCCATCTGTTCTGTCCGGTGTTTCCTGTTTTGTTATGTTTTTGTGCTTGGCT
GACTACCTTGTTCCCATTCTAGCTCCTAGAATTTTTGGCTCCAATAAATGGACCACTGAGCAACAGCAAAGATTCCATGA
AATTTGTAGCAATCTAGTGAAAACTCGACGCAGAGCTGTGGGCTGGTGGAAACGCCTCTTTACACTAAAGGAAGAAAAGC
CTAAAATGTACTTCATGACAATGATCGTTTCTCTCGCTGCGGTTGCTTGGGTGGGACAGCAAGTCCACAACCTGCTGCTC
ACCTATCTGATAGCCACAATGGTGCGCATGAATGTCCTGGCAGATGCTCTCAAGAGCATCAACAACGCTGAAAAGAGAGG
CAAGCGCCAGGTTCTTATCAGGCCATGCTCCAAAGTCATCGTCCGATTTCTCACTGTGATGATGAAGCATGGTTACATTG
GCGAATTTGAAATCATCGATGATCACAGAGCTGGGAAAATTGTTGTGAACCTCACAGGCAGGTTAAACAAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 130 .57 RPM
SRP017611_brain 58 .19 RPM
SRP017611_kidney 455 .13 RPM
SRP017611_liver 125 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007800 possible_ortholog 5 retrogenes
retro_chof_1153, retro_chof_1320, retro_chof_2130, retro_chof_2284, retro_chof_270,
Callithrix jacchus ENSCJAG00000020068 possible_ortholog 2 retrogenes
retro_cjac_782, retro_cjac_857,
Cavia porcellus ENSCPOG00000012603 possible_ortholog 1 retrogene
retro_cpor_291,
Erinaceus europaeus ENSEEUG00000005434 possible_ortholog 1 retrogene
retro_eeur_186,
Echinops telfairi ENSETEG00000020152 possible_ortholog 2 retrogenes
retro_etel_2083, retro_etel_549,
Homo sapiens ENSG00000170540 possible_ortholog 3 retrogenes
retro_hsap_1393, retro_hsap_559, retro_hsap_902,
Gorilla gorilla ENSGGOG00000002902 possible_ortholog 3 retrogenes
retro_ggor_1080, retro_ggor_505, retro_ggor_729,
Loxodonta africana ENSLAFG00000018632 possible_ortholog 2 retrogenes
retro_lafr_420, retro_lafr_741,
Macropus eugenii ENSMEUG00000007896 ortholog_one2many 1 retrogene
retro_meug_1842,
Microcebus murinus ENSMICG00000012246 possible_ortholog 5 retrogenes
retro_mmur_1383, retro_mmur_1561, retro_mmur_582, retro_mmur_939, retro_mmur_951,
Monodelphis domestica ENSMODG00000005944 ortholog_one2many 1 retrogene
retro_mdom_794,
Nomascus leucogenys ENSNLEG00000005499 possible_ortholog 2 retrogenes
retro_nleu_1079, retro_nleu_381,
Ornithorhynchus anatinus ENSOANG00000012228 ortholog_one2one 2 retrogenes
retro_oana_100, retro_oana_77,
Oryctolagus cuniculus ENSOCUG00000005740 possible_ortholog 1 retrogene
retro_ocun_1921,
Otolemur garnettii ENSOGAG00000013202 possible_ortholog 2 retrogenes
retro_ogar_3502, retro_ogar_3504,
Pongo abelii ENSPPYG00000007140 possible_ortholog 3 retrogenes
retro_pabe_1153, retro_pabe_2798, retro_pabe_777,
Pan troglodytes ENSPTRG00000007824 possible_ortholog 3 retrogenes
retro_ptro_418, retro_ptro_622, retro_ptro_957,
Pteropus vampyrus ENSPVAG00000002906 possible_ortholog 1 retrogene
retro_pvam_1337,
Sarcophilus harrisii ENSSHAG00000017346 ortholog_one2many 1 retrogene
retro_shar_691,
Ictidomys tridecemlineatus ENSSTOG00000005816 possible_ortholog 1 retrogene
retro_itri_1595,
Tupaia belangeri ENSTBEG00000013916 possible_ortholog 3 retrogenes
retro_tbel_1609, retro_tbel_3046, retro_tbel_3772,
Tarsius syrichta ENSTSYG00000011092 possible_ortholog 1 retrogene
retro_tsyr_1528,
Tursiops truncatus ENSTTRG00000005171 possible_ortholog 5 retrogenes
retro_ttru_1610, retro_ttru_1701, retro_ttru_519, retro_ttru_71, retro_ttru_929,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_21 93.85 100.00
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2. retro_cfam_114 98.21 70.89
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3. retro_cfam_127 96.12 99.23
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4. retro_cfam_427 96.09 98.46
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5. retro_cfam_464 66.09 86.15
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6. retro_cfam_699 97.06 78.46
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7. retro_cfam_831 97.70 66.92
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8. retro_cfam_888 96.15 100.00
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9. retro_cfam_1204 99.01 77.69
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10. retro_cfam_1232 75.00 81.54
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11. retro_cfam_1261 76.34 71.54
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12. retro_cfam_1301 76.15 99.23
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13. retro_cfam_1348 90.77 100.00
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14. retro_cfam_1364 74.74 73.08
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15. retro_cfam_1525 93.08 100.00
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16. retro_cfam_1582 90.70 99.23
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17. retro_cfam_1605 76.34 100.00
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18. retro_cfam_1642 91.47 99.23
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19. retro_cfam_1745 80.60 100.00
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20. retro_cfam_1966 93.13 100.00
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Download FASTA sequences of all ENSCAFG00000018174 retrocopies