RetrogeneDB ID: | retro_cfam_1364 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 3:14033496..14033781(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSCAFG00000018174 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein S15a (RPS15A), mRNA. [Source:RefSeq mRNA;Acc:NM_001252147] |
Percent Identity: | 74.74 % |
Parental protein coverage: | 73.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLT |
..LT.MMKHGY.G.FEI.DD.RAGK.VVNL.GRLNK.G.ISPR.DVQLK.LE..QNNL.PS.Q.GF.VLT | |
Retrocopy | QLLTAMMKHGYVGKFEITDDQRAGKTVVNLMGRLNKRGMISPRLDVQLKNLEERQNNLIPSCQIGFTVLT |
Parental | TSAGIMDHEEARRKHTGGKILGFFF |
TS..IMD.EEAR.K.TGGKILGFFF | |
Retrocopy | TSVSIMDCEEAR*KYTGGKILGFFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .29 RPM | 130 .57 RPM |
SRP017611_brain | 0 .71 RPM | 58 .19 RPM |
SRP017611_kidney | 0 .73 RPM | 455 .13 RPM |
SRP017611_liver | 0 .29 RPM | 125 .88 RPM |