RetrogeneDB ID: retro_ggor_683

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 11:122377071..122377892(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENSG00000197849
• Ensembl ID: ENSGGOG00000023114
• Aliases: None
• Description: None

Sequence

>retro_ggor_683
ATGGAAGCAGTAAATTATTCTTCAGTGACTGAGTTCATTCTGGTTGGGCTAACAGAAGAGCCTGAGCTCCAGCTGCCCCT
CTTCCTTGCCTTCCTGGGAAACTATATGGTCACAGTACTGGGGAACCTGGGCGTGATCACATTGATTAGGCTCAGTTCTC
ACCTGCATACCCCCATGTACTATTTCCTCAACAGTCTGTTCTTCATTGATCTCTGCCATTCCACTATCATTACCCCTAAG
ATGCTGGTGAACTTTGTGACAGAGAAGAACATCATCTCCTACCCTGAATGCATGACTCAGCTCTATTTATTCAGTATTTT
TGCTATTGCAGAGTGTCACATGTTGGCTGCAATGGCTTATGACTGCTACATTGCCATATGTAACCCACTGCTTTACCATG
TCACCATGTCTTACCAGGTCTGCTCCTGGATGATAGTTGAGGTGTATTTTATGGGCTTTATTGGTGCTACGTGCTCACAC
AGTCTGCATGCTAAGAGTGCTTTTCTGTAAGGCTGATGTAATCAACCATTACTTCTGTGATCTTTTCCCACTACTGGAGC
TCTCCTGCTCCAGTATTTCTATCAATGAAATAGTAGTTTGTGCTTCGGTGCATTTAATATCCTTTTCCCTAGCCTGACCA
TCCTTAGCTCTTACATCTTTATTATTGCCAGCATCCTCTATATTTGCTCCACTGAAGGAAATTCCAAAGTCTTTAGCATT
TATGGCTCTCACATGGTGGTGGATGTGGTCTTTTAGGGTCTGCAATATTCATATACCAGTAGCTATCATCTGTCAGCTCC
AAGGAGTAATGGAAAGTATCC

Alignment

ORF - retro_ggor_683 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.76 %
• Parental protein coverage: 88.1 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MSGENNSSVTEFILAGLSEQPELQLPLFLLFLGIYVVTVVGNLGMTTLIWLSSHLHTPMYYFLSSLSFID
          M...N.SSVTEFIL.GL.E.PELQLPLFL.FLG.Y.VTV.GNLG..TLI.LSSHLHTPMYYFL.SL.FID
Retrocopy MEAVNYSSVTEFILVGLTEEPELQLPLFLAFLGNYMVTVLGNLGVITLIRLSSHLHTPMYYFLNSLFFID

Parental  FCHSTVITPKMLVNFVTEKNIIFYPECMTQLYFFLIFAIAECHMLAAMAYDRYMAICSPLLYSVIISNKA
          .CHST.ITPKMLVNFVTEKNII.YPECMTQLY.F.IFAIAECHMLAAMAYD.Y.AIC.PLLY.V..S...
Retrocopy LCHSTIITPKMLVNFVTEKNIISYPECMTQLYLFSIFAIAECHMLAAMAYDCYIAICNPLLYHVTMSYQV

Parental  CFSLILGVYIIGLVCAS-VHTGCMFRVQFCKFDVINHYFCDLLPLLKLSCSSIYVNKLLI-LCVGAFNIL
          C...I..VY..G...A...HT.CM.RV.FCK.DVINHYFCDL.PLL.LSCSSI..N.....LC.GAFNIL
Retrocopy CSWMIVEVYFMGFIGAT>AHTVCMLRVLFCKADVINHYFCDLFPLLELSCSSISINEIVV<LCFGAFNIL

Parental  VPSLTILCSYIFIIASILHIRSTEGRSKAFSTCSSHMLAVVIF-FGSAAFMYLQPSSVSSMDQGKVS
          .PSLTIL.SYIFIIASIL.I.STEG.SK.FS...SHM...V.F..GSA.F.Y...SSVSS....KVS
Retrocopy FPSLTILSSYIFIIASILYICSTEGNSKVFSIYGSHMVVDVVF<LGSAIFIYQ*LSSVSSKE*WKVS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.00 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.10 RPM	0.10 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_683 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_683 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000023114	6 retrocopies	retro_ggor_682, retro_ggor_683 , retro_ggor_684, retro_ggor_756, retro_ggor_757, retro_ggor_758,
Macropus eugenii	ENSMEUG00000013370	4 retrocopies	retro_meug_2060, retro_meug_2076, retro_meug_35, retro_meug_447,