RetrogeneDB ID: retro_ggor_684

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 11:122612253..122613180(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENSG00000197849
• Ensembl ID: ENSGGOG00000023114
• Aliases: None
• Description: None

Sequence

>retro_ggor_684
ATGACTGTCAAAAGTCATTCTATAGTGACAGAGTTCAGTCTCAGGGGATTAACGAAGCAGCCAGATCTCCAGCTCTTTCA
CTTCCTCATTTTCCCTGATATCCATATGGTCACAATGGTGGGGAACCTGGGCATGATCACTCTAATTTGTCTGAACTCTC
AGCTTCACACTCCCATGTACTGCTTCTTCAGCAATTTGTCACTCTTGGATCTCTGCTATTCCTCCATTACTAACCCTAAG
ATGCTGGTGAACTTTGTGTCAAAGAAGAACATTATCTCTTATGCAGGGTACATGTCATAGTTCTACTTTTTCCTGGTTTT
TGTCATTGCTGGGTGTTACATGCTGACGGTGAAGGCCTGTGACTACTATGTTGCCATCTGCTGCCCTTTGCTTTGCAACG
TCATCATGTCTCATGTCACCTGCTCCCTGATGGTGGCTGTGGTCTACACCATGGGACTCGTTGTCTCCACAATAGAGACT
GGGCTCATATTAAAATTGCCGTATTGTGAACTCCTCACCAGTCACTGCTTCTGTGACATCCTCCCTTTCATGAAACTCTC
CTGATCTAGTGCCTGTGATGTTGAGATGACAGTCTTCTTTTTTGATAGATTCAACCTGAGAATCATGATCTTAACGGTTC
TTGTTTCTTACACCTTCATTCTCTTCAGCATCCTGCACATCAACACCACTGAGGGCAGGTCCAAAGTCTTCAGCACCTGC
AGCTCCCACCTTGCAGCTATAGGGATGTTCCACGGATAGACTGCATTCAGATACTTAAAACCCACCATAACCAGTTCCCT
GGCCCAAGAGAATGTGGCCTCTGTGTCCTACACTACAGTAATCTATGTGCCGAATCCCCTAATGAACAGCCTGAAAAACA
AGGATGTAAAAGCTGCCATGCAGAAAACACTAAGGAGTAGGTTTTGT

Alignment

ORF - retro_ggor_684 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.97 %
• Parental protein coverage: 99.68 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSGENNSSVTEFILAGLSEQPELQLPLFLLFLGIYVVTVVGNLGMTTLIWLSSHLHTPMYYFLSSLSFID
          M.....S.VTEF.L.GL..QP.LQL..FL.F..I..VT.VGNLGM.TLI.L.S.LHTPMY.F.S.LS..D
Retrocopy MTVKSHSIVTEFSLRGLTKQPDLQLFHFLIFPDIHMVTMVGNLGMITLICLNSQLHTPMYCFFSNLSLLD

Parental  FCHSTVITPKMLVNFVTEKNIIFYPECMTQLYFFLIFAIAECHMLAAMAYDRYMAICSPLLYSVIISNKA
          .C.S....PKMLVNFV..KNII.Y...M...YFFL.F.IA.C.ML...A.D.Y.AIC.PLL..VI.S...
Retrocopy LCYSSITNPKMLVNFVSKKNIISYAGYMS*FYFFLVFVIAGCYMLTVKACDYYVAICCPLLCNVIMSHVT

Parental  CFSLILGVYIIGLVCASVHTGCMFRVQFCKFDVINHYFCDLLPLLKLSCSSIYVNKLLILCVGAFNILVP
          C......VY..GLV.....TG.......C......H.FCD.LP..KLS.SS.............FN....
Retrocopy CSLMVAVVYTMGLVVSTIETGLILKLPYCEL-LTSHCFCDILPFMKLS*SSACDVEMTVFFFDRFNLRIM

Parental  SLTILCSYIFIIASILHIRSTEGRSKAFSTCSSHMLAVVIFFGSAAFMYLQPSSVSSMDQGKVSSVFYTI
          .LT.L.SY.FI..SILHI..TEGRSK.FSTCSSH..A...F.G..AF.YL.P...SS..Q..V.SV.YT.
Retrocopy ILTVLVSYTFILFSILHINTTEGRSKVFSTCSSHLAAIGMFHG*TAFRYLKPTITSSLAQENVASVSYTT

Parental  VVPMLNPLIYSLRNKDVHVALKKMLGKRTC
          V....NPL..SL.NKDV..A..K.L..R.C
Retrocopy VIYVPNPLMNSLKNKDVKAAMQKTLRSRFC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.00 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.10 RPM	0.10 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_684 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_684 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000023114	6 retrocopies	retro_ggor_682, retro_ggor_683, retro_ggor_684 , retro_ggor_756, retro_ggor_757, retro_ggor_758,
Macropus eugenii	ENSMEUG00000013370	4 retrocopies	retro_meug_2060, retro_meug_2076, retro_meug_35, retro_meug_447,