RetrogeneDB ID: retro_meug_35

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold12495:14155..15025(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000003405
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000013370
• Aliases: None
• Description: None

Sequence

>retro_meug_35
GACAGAGGGAATAACTCTGCAGTTTCAGAGTTCATCCTTGAAGGGCTAACACAGAGGTTAGAGCTCCAGATTCCCCTCTT
ACCATTATTCTTGAGCATATATGTGGTCACCGTTGTGGGGAACCTGGGCATGATAACACTGATTAGCATCACTTCTCATC
TCCATACTCCCATGTACTATTTACTCAGCAGCTTGTCTTTCATTGATTTCTGTCATTCTACAGTGATCACCCCCAAAATG
TTAGTGAATTTTGTGTCAGAGAAGAATATCATCTCCTACAACGAATGCATGACTCAGCTCTATTTCTTCCTCCTTTTTGC
AATTGCTAAGTGTCATATGTTGGCAGCTATGGCCTATGACCGTTATGTAGCAATTTGTAGTCCCCTGCTATATAATACTA
TCATGTCCCTTCAGGTCTACATTTGGTTAGTAGGTGGTGTATACATGATGGGCTTGGTTGGTGCCACAGTTTACACAGGC
TTCATGCTTAGAGTATTCTTCTGTAAAGACAATGTCATCAATCATTACTTCTGTGATCTCAATCCTCTCCTAGAGCTTTC
TTGCTCCAGCACCTACATTAATGAAATTATGGTTGTTTGCCTCAGCACCTTTAATATCTGCATACCAACTCTGACCATTG
TTAGCTCTTACATCTTCATTATTGCCAGCATTCTCCATATTCGCTCCACTGAAGGGAGGTCCAAGGCTTTCAGCACCTGC
AGCTCTCATATGGCAGCAGTGGGTTTCTTCTTTGGTTCAGCTGCCTTCATGTATCTGCAGCCCTCTTCGGTGAGCTCCAT
GGAACAGGGGAAAGTATCCTCTGTGTTTTATACAATCTTTGTCCCCATGTTGAACCCCCTTATCTATAGC

Alignment

ORF - retro_meug_35 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.84 %
• Parental protein coverage: 92.18 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NNSTVTGFVLEGLSDWPVLQIPLLLLFLSIYVATMVGNLGMITLIHISSHLHTPMYYLLRSLSFIDLCHS
          NNS.V..F.LEGL.....LQIPLL.LFLSIYV.T.VGNLGMITLI.I.SHLHTPMYYLL.SLSFID.CHS
Retrocopy NNSAVSEFILEGLTQRLELQIPLLPLFLSIYVVTVVGNLGMITLISITSHLHTPMYYLLSSLSFIDFCHS

Parental  TVIIPKMLVNFVSEKNIISYNDCMTQLYFFLIFVIAECHMLAAMAYDRYVAICRPLLYNV---HQVCIWL
          TVI.PKMLVNFVSEKNIISYN.CMTQLYFFL.F.IA.CHMLAAMAYDRYVAIC.PLLYN.....QV.IWL
Retrocopy TVITPKMLVNFVSEKNIISYNECMTQLYFFLLFAIAKCHMLAAMAYDRYVAICSPLLYNTIMSLQVYIWL

Parental  VGGVYIMGLVGATVHTGFMLRVFFCKNNVINHYFCDLNPLLELACSSTYFNEVMVICLSGFNILIPILII
          VGGVY.MGLVGATV.TGFMLRVFFCK.NVINHYFCDLNPLLEL.CSSTY.NE.MV.CLS.FNI.IP.L.I
Retrocopy VGGVYMMGLVGATVYTGFMLRVFFCKDNVINHYFCDLNPLLELSCSSTYINEIMVVCLSTFNICIPTLTI

Parental  ASSYIFIIASILHIRSTEREVQAFSTCSSHMAAVGFFFGSGAFMXXXPST-NSMDQGKVSSVFYSIVIPM
          .SSYIFIIASILHIRSTE....AFSTCSSHMAAVGFFFGS.AFM...PS...SM.QGKVSSVFY.I..PM
Retrocopy VSSYIFIIASILHIRSTEGRSKAFSTCSSHMAAVGFFFGSAAFMYLQPSSVSSMEQGKVSSVFYTIFVPM

Parental  LNPLIYS
          LNPLIYS
Retrocopy LNPLIYS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_35 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_35 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000023114	6 retrocopies	retro_ggor_682, retro_ggor_683, retro_ggor_684, retro_ggor_756, retro_ggor_757, retro_ggor_758,
Macropus eugenii	ENSMEUG00000013370	4 retrocopies	retro_meug_2060, retro_meug_2076, retro_meug_35 , retro_meug_447,
Ochotona princeps	ENSOPRG00000013867	1 retrocopy	retro_opri_964,