RetrogeneDB ID: retro_ggor_756

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 11:122591771..122592692(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSGGOG00000026386
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ENSG00000197849
• Ensembl ID: ENSGGOG00000023114
• Aliases: None
• Description: None

Sequence

>retro_ggor_756
ATGGCTGCTGAGAATTCCTCCTTCGTGACAGAGTTTATCCTCGCAGGCTTAACCGACCAACCGGGAGTCCAGATCCCCCT
CTTCTTCCTGTTTCTAGGCTTCTACGTGGTCACTGTGGTGGGGAACCTGGGCTTGATAACCCTGATAAGGCTCAACTCTC
ACTTGCACACCCCTATGTACTTCTTCCTCTATAACTTGTCCTTCATAGATTTCTGCTATTCCAGTGTTATCACTCCCAAA
ATGCTGATGAGCTTTGTCTCAAAGAAGAACAGCATCTCCTACGCAGGGTGTATGACTCAGCTCTTCTTCTTTCTTTTCTT
TGTTGTCTCTGAGTCCTTCATCCTGTCAGCAATGGCGTATGACCGCTATGTGGCCATCTGTAACCCACTGTTGTACATGG
TCACCATGTCTCCCCAGGTGTGTTTTCTCCTTTTGTTGGGTGTCTATGGGATGGGGTTTGCTGGGGCCATGGCCCACACA
GCGTGCACGATGGGTGTGACCTTCTGTGCCAATAACCTTGTCAACCACTACATGTGCGACATCCTTCCCCTTCTCGAGTG
TGCTTGCACCAGCACCTATGTGAATGAGCTTGTAGTGTTTGTTGTTGTGGGCATTGATATTGGTGTGCCCACAGTCACCA
TCTTCATTTCCTATGCTCTCATTCTTTCCAGCATCTTCCACATTGATTCCACGGAGGGCAGGTCCAAAGCCTTCAGCACC
TGCAGCTCCCACATAATGGCAGTTTCTCTGTTCTTTGGGTCAGGAGCATTCATGTATCTCAAACCCTTTTCTCTTTTAGC
TATGAACCAGGGCAAGGTGTCTTCCCTATTCTATACCACTGTGGTGCCCATGCTCAACCCATTAATTTATAGCCTGAGGA
ATAAGGACGTCAAAGTTGCTCTAAAGAAAATCTTGAACAAA

Alignment

ORF - retro_ggor_756 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.15 %
• Parental protein coverage: 98.71 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSGENNSSVTEFILAGLSEQPELQLPLFLLFLGIYVVTVVGNLGMTTLIWLSSHLHTPMYYFLSSLSFID
          M..EN.S.VTEFILAGL..QP..Q.PLF.LFLG.YVVTVVGNLG..TLI.L.SHLHTPMY.FL..LSFID
Retrocopy MAAENSSFVTEFILAGLTDQPGVQIPLFFLFLGFYVVTVVGNLGLITLIRLNSHLHTPMYFFLYNLSFID

Parental  FCHSTVITPKMLVNFVTEKNIIFYPECMTQLYFFLIFAIAECHMLAAMAYDRYMAICSPLLYSVIISNKA
          FC.S.VITPKML..FV..KN.I.Y..CMTQL.FFL.F...E...L.AMAYDRY.AIC.PLLY.V..S...
Retrocopy FCYSSVITPKMLMSFVSKKNSISYAGCMTQLFFFLFFVVSESFILSAMAYDRYVAICNPLLYMVTMSPQV

Parental  CFSLILGVYIIGLVCASVHTGCMFRVQFCKFDVINHYFCDLLPLLKLSCSSIYVNKLLILCVGAFNILVP
          CF.L.LGVY..G...A..HT.C...V.FC.....NHY.CD.LPLL...C.S.YVN.L....V....I.VP
Retrocopy CFLLLLGVYGMGFAGAMAHTACTMGVTFCANNLVNHYMCDILPLLECACTSTYVNELVVFVVVGIDIGVP

Parental  SLTILCSYIFIIASILHIRSTEGRSKAFSTCSSHMLAVVIFFGSAAFMYLQPSSVSSMDQGKVSSVFYTI
          ..TI..SY..I..SI.HI.STEGRSKAFSTCSSH..AV..FFGS.AFMYL.P.S...M.QGKVSS.FYT.
Retrocopy TVTIFISYALILSSIFHIDSTEGRSKAFSTCSSHIMAVSLFFGSGAFMYLKPFSLLAMNQGKVSSLFYTT

Parental  VVPMLNPLIYSLRNKDVHVALKKMLGK
          VVPMLNPLIYSLRNKDV.VALKK.L.K
Retrocopy VVPMLNPLIYSLRNKDVKVALKKILNK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.00 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.00 RPM	0.10 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_756 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_756 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000023114	6 retrocopies	retro_ggor_682, retro_ggor_683, retro_ggor_684, retro_ggor_756 , retro_ggor_757, retro_ggor_758,
Macropus eugenii	ENSMEUG00000013370	4 retrocopies	retro_meug_2060, retro_meug_2076, retro_meug_35, retro_meug_447,