RetrogeneDB ID: | retro_hsap_103 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 22:41257068..41257998(-) | ||
Located in intron of: | ENSG00000196236 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000172404 | |
Aliases: | DNAJB7, DJ5, HSC3 | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJB6 | ||
Ensembl ID: | ENSG00000105993 | ||
Aliases: | DNAJB6, DJ4, DnaJ, HHDJ1, HSJ-2, HSJ2, LGMD1D, LGMD1E, MRJ, MSJ-1 | ||
Description: | DnaJ (Hsp40) homolog, subfamily B, member 6 [Source:HGNC Symbol;Acc:14888] |
Percent Identity: | 63.71 % |
Parental protein coverage: | 76.07 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGK |
MVDYYEVLG.QR.ASPEDIKKAY.K.ALKWHPDKNPENKEEAERKFK.VAEAYEVLS...KRDIYDKYG. | |
Retrocopy | MVDYYEVLGLQRYASPEDIKKAYHKVALKWHPDKNPENKEEAERKFKEVAEAYEVLSNDEKRDIYDKYGT |
Parental | EGLNGGGGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFEDFFGNRRGPRGSRSRGTGSF |
EGLNGGG...SHFD...E.GFTF..PDDVF.E.F..RDPFSF.FFED..ED.........G.R.R..G.F | |
Retrocopy | EGLNGGG---SHFDDECEYGFTFHKPDDVFKEIFHERDPFSFHFFEDSLEDLLNRPGSSYGNRNRDAGYF |
Parental | FSAFSGFPSFGSGFSSFDTGFTSFGSLGHGGLTSFSSTSFGGSGMGNFKSISTSTKMVNGRKITTKRIVE |
FS..S..P.F...FSS.DTG.TS.GSLGH.GLTSFSS..F..SGM.N..S..TS.K.VNGR.I.TK.I.E | |
Retrocopy | FSTASEYPIF-EKFSSYDTGYTSQGSLGHEGLTSFSSLAFDNSGMDNYISVTTSDKIVNGRNINTKKIIE |
Parental | NGQERVEVEEDGQLKSLTINGVADDDALAEERMRRGQN |
..QER.E.E..G.L.....N.VA.....A.E...R.Q. | |
Retrocopy | SDQER-EAEDNGELTFFLVNSVANEEGFAKECSWRTQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 1 .29 RPM | 81 .30 RPM |
bodymap2_adrenal | 2 .97 RPM | 80 .67 RPM |
bodymap2_brain | 1 .29 RPM | 114 .06 RPM |
bodymap2_breast | 2 .78 RPM | 99 .30 RPM |
bodymap2_colon | 0 .44 RPM | 180 .15 RPM |
bodymap2_heart | 0 .26 RPM | 132 .94 RPM |
bodymap2_kidney | 1 .63 RPM | 90 .02 RPM |
bodymap2_liver | 1 .14 RPM | 26 .47 RPM |
bodymap2_lung | 0 .05 RPM | 117 .26 RPM |
bodymap2_lymph_node | 0 .69 RPM | 182 .88 RPM |
bodymap2_ovary | 3 .32 RPM | 78 .07 RPM |
bodymap2_prostate | 2 .06 RPM | 151 .57 RPM |
bodymap2_skeletal_muscle | 1 .16 RPM | 278 .60 RPM |
bodymap2_testis | 7 .01 RPM | 194 .62 RPM |
bodymap2_thyroid | 1 .85 RPM | 122 .59 RPM |
bodymap2_white_blood_cells | 0 .35 RPM | 92 .61 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_109159 | 1810 libraries | 15 libraries | 2 libraries | 1 library | 1 library |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_210 |
Macaca mulatta | retro_mmul_165 |
Mus musculus | retro_mmus_171 |
Rattus norvegicus | retro_rnor_212 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .88 RPM |
CEU_NA11843 | 1 .59 RPM |
CEU_NA11930 | 1 .27 RPM |
CEU_NA12004 | 1 .82 RPM |
CEU_NA12400 | 0 .53 RPM |
CEU_NA12751 | 1 .41 RPM |
CEU_NA12760 | 1 .21 RPM |
CEU_NA12827 | 0 .42 RPM |
CEU_NA12872 | 0 .73 RPM |
CEU_NA12873 | 0 .93 RPM |
FIN_HG00183 | 1 .29 RPM |
FIN_HG00277 | 0 .48 RPM |
FIN_HG00315 | 0 .58 RPM |
FIN_HG00321 | 0 .79 RPM |
FIN_HG00328 | 0 .88 RPM |
FIN_HG00338 | 0 .28 RPM |
FIN_HG00349 | 1 .28 RPM |
FIN_HG00375 | 1 .39 RPM |
FIN_HG00377 | 1 .13 RPM |
FIN_HG00378 | 1 .81 RPM |
GBR_HG00099 | 1 .63 RPM |
GBR_HG00111 | 1 .40 RPM |
GBR_HG00114 | 1 .26 RPM |
GBR_HG00119 | 0 .41 RPM |
GBR_HG00131 | 0 .66 RPM |
GBR_HG00133 | 1 .09 RPM |
GBR_HG00134 | 0 .81 RPM |
GBR_HG00137 | 0 .66 RPM |
GBR_HG00142 | 0 .39 RPM |
GBR_HG00143 | 1 .12 RPM |
TSI_NA20512 | 1 .33 RPM |
TSI_NA20513 | 1 .09 RPM |
TSI_NA20518 | 0 .31 RPM |
TSI_NA20532 | 1 .63 RPM |
TSI_NA20538 | 1 .47 RPM |
TSI_NA20756 | 0 .76 RPM |
TSI_NA20765 | 1 .12 RPM |
TSI_NA20771 | 0 .60 RPM |
TSI_NA20786 | 0 .97 RPM |
TSI_NA20798 | 1 .25 RPM |
YRI_NA18870 | 1 .08 RPM |
YRI_NA18907 | 2 .36 RPM |
YRI_NA18916 | 1 .47 RPM |
YRI_NA19093 | 1 .17 RPM |
YRI_NA19099 | 1 .49 RPM |
YRI_NA19114 | 1 .76 RPM |
YRI_NA19118 | 1 .62 RPM |
YRI_NA19213 | 1 .29 RPM |
YRI_NA19214 | 0 .69 RPM |
YRI_NA19223 | 1 .51 RPM |