RetrogeneDB ID: | retro_itri_74 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393302.1:970742..971672(+) | ||
Located in intron of: | ENSSTOG00000003200 | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000003227 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000002964 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.07 % |
Parental protein coverage: | 73.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVDYYEVLGVQRHASPEDIKKAYRKLALRWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGK |
MVDYYEVLGVQR.ASPEDIKKAYRK.AL.WHPDKNPENKEEAERKFK.VAEAYEVLS...KRDIYDKYGK | |
Retrocopy | MVDYYEVLGVQRYASPEDIKKAYRKVALKWHPDKNPENKEEAERKFKEVAEAYEVLSNDEKRDIYDKYGK |
Parental | EGLNGGGGGGSHFDSPFEFGFTFRNPDDVFRDFFGGRDPFSFDFFEDTFDDFFGNRRGPRGSRNRGAGSF |
EGLN..GGGGSHF....E..F.FR.PDDVF...F..RDPFSF.FFED...D.....R....SR...AGSF | |
Retrocopy | EGLN--GGGGSHFEDESEYSFIFRKPDDVFKEIFRERDPFSFHFFEDSLEDLLNSPRSFYESRG-SAGSF |
Parental | FSAFSGFPTFGGGFSAFDTGFTSFGSLGHGGLTSFSSTSFGGSGMGSFKSISTSTKIVNGRKITTKRIVE |
FS..S..PT....FS..DTG.T...SLGH.GL.SFSS..F..SGM....S..TS.KI.NGR.I..K.I.E | |
Retrocopy | FSTTSEHPTL-ERFSFYDTGYTPYNSLGHEGLPSFSSLAFDDSGMYNYISFTTSSKI-NGRNINMKKIIE |
Parental | NGQERVEVEEDGQLKSLMINGVADEDALVEE |
..Q.......D..LKS...NGVADED....E | |
Retrocopy | DYQGIEDIQDD-ELKSFFVNGVADEDSFAAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |