RetrogeneDB ID: | retro_cpor_814 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_29:10876817..10877243(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJB6 | ||
Ensembl ID: | ENSCPOG00000013953 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily B, member 6 [Source:HGNC Symbol;Acc:14888] |
Percent Identity: | 68.71 % |
Parental protein coverage: | 62.34 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MVDYYEVLGVQRHASPEDIKK-AYRKLALQWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYG |
.VD.Y...G.QR.AS.ED.K..AYR.LALQWHP.K..E.K..AE.KF.QVAEA.E.LS.AKK..IYDKY. | |
Retrocopy | LVDDYGLGGMQRCASHEDSKR<AYRSLALQWHPGKT*E*KQ-AEQKFRQVAEAHETLSYAKKPVIYDKYD |
Parental | KEGLNGGGGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFS-FDFFEDPFEDLFGNRRGPR-GSRNRGT |
KEGLNGGGGGGSH..SPFE.G.T..NPDDVFRE.F.GR.PFS..DFFEDPFE..FGN...P..GSR.RG. | |
Retrocopy | KEGLNGGGGGGSHSGSPFESGVTCWNPDDVFRETFSGRNPFS<IDFFEDPFEEVFGN*TSPE<GSRSRGA |
Parental | GSFFSAF |
GSFFSAF | |
Retrocopy | GSFFSAF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 60 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 46 .80 RPM |
SRP017611_liver | 0 .00 RPM | 32 .38 RPM |
SRP040447_lung | 0 .00 RPM | 52 .84 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 39 .10 RPM |