Parental gene: | DNAJB6, ENSCPOG00000013953 |
| Aliases: | None |
| Description: | DnaJ (Hsp40) homolog, subfamily B, member 6 [Source:HGNC Symbol;Acc:14888] |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_32:5061696..5079080(+) |
>ENSCPOG00000013953
ATGGTGGATTACTATGAAGTTCTAGGCGTGCAGAGACATGCCTCCCCTGAGGACATCAAGAAGGCATACCGGAAACTGGC
GCTACAGTGGCACCCAGATAAAAATCCTGAGAATAAAGAAGAAGCAGAGCGAAAATTCAAACAAGTGGCTGAGGCATATG
AGGTGTTATCAGATGCTAAAAAACGGGACATCTATGACAAATATGGCAAAGAAGGCTTAAATGGTGGTGGAGGAGGTGGA
AGTCATTTTGATAGTCCATTTGAGTTTGGGTTCACATTCCGGAACCCAGACGATGTCTTCAGGGAATTTTTTGGTGGAAG
GGACCCATTTTCATTTGACTTCTTTGAAGACCCATTTGAAGACCTTTTTGGGAACCGAAGGGGTCCCCGAGGAAGCAGAA
ACCGTGGCACAGGCTCTTTTTTCTCCGCCTTCAGTGGGTTTCCATCCTTTGGAGGTGGATTTTCTGCATTTGATACAGGA
TTCACTTCGTTCGGGTCCCTGGGCCATGGGGGCCTCACTTCATTTTCGTCCACCTCATTTGGCGGCAGTGGCATGGGCAA
CTTCAAGTCTATATCAACTTCTACCAAAATCGTGAACGGTAGAAAGATCACCACAAAGAGAATTGTCGAGAATGGTCAAG
AAAGAGTAGAAGTTGAAGAAGATGGACAGTTAAAGTCCTTAACAATAAATGGT
ATGGTGGATTACTATGAAGTTCTAGGCGTGCAGAGACATGCCTCCCCTGAGGACATCAAGAAGGCATACCGGAAACTGGC
GCTACAGTGGCACCCAGATAAAAATCCTGAGAATAAAGAAGAAGCAGAGCGAAAATTCAAACAAGTGGCTGAGGCATATG
AGGTGTTATCAGATGCTAAAAAACGGGACATCTATGACAAATATGGCAAAGAAGGCTTAAATGGTGGTGGAGGAGGTGGA
AGTCATTTTGATAGTCCATTTGAGTTTGGGTTCACATTCCGGAACCCAGACGATGTCTTCAGGGAATTTTTTGGTGGAAG
GGACCCATTTTCATTTGACTTCTTTGAAGACCCATTTGAAGACCTTTTTGGGAACCGAAGGGGTCCCCGAGGAAGCAGAA
ACCGTGGCACAGGCTCTTTTTTCTCCGCCTTCAGTGGGTTTCCATCCTTTGGAGGTGGATTTTCTGCATTTGATACAGGA
TTCACTTCGTTCGGGTCCCTGGGCCATGGGGGCCTCACTTCATTTTCGTCCACCTCATTTGGCGGCAGTGGCATGGGCAA
CTTCAAGTCTATATCAACTTCTACCAAAATCGTGAACGGTAGAAAGATCACCACAAAGAGAATTGTCGAGAATGGTCAAG
AAAGAGTAGAAGTTGAAGAAGATGGACAGTTAAAGTCCTTAACAATAAATGGT
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 32 .38 RPM |
| SRP017611_kidney | 46 .80 RPM |
| SRP017611_brain | 60 .05 RPM |
| SRP040447_lung | 52 .84 RPM |
| SRP040447_skeletal_muscle | 39 .10 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000001332 | possible_ortholog | 3 retrogenes | |
| Bos taurus | ENSBTAG00000000771 | possible_ortholog | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000005174 | possible_ortholog | 6 retrogenes | |
| Callithrix jacchus | ENSCJAG00000005288 | possible_ortholog | 7 retrogenes | |
| Equus caballus | ENSECAG00000009005 | ortholog_one2many | 2 retrogenes | |
| Felis catus | ENSFCAG00000015654 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000105993 | ortholog_one2one | 9 retrogenes | |
| Gorilla gorilla | ENSGGOG00000004703 | ortholog_one2one | 6 retrogenes | |
| Loxodonta africana | ENSLAFG00000013384 | possible_ortholog | 4 retrogenes | |
| Microcebus murinus | ENSMICG00000009760 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000009123 | possible_ortholog | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000003176 | ortholog_one2one | 6 retrogenes | |
| Mustela putorius furo | ENSMPUG00000009797 | possible_ortholog | 4 retrogenes | |
| Mus musculus | ENSMUSG00000029131 | ortholog_one2one | 6 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000001380 | ortholog_one2many | 5 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000000064 | possible_ortholog | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000010640 | possible_ortholog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000018228 | possible_ortholog | 4 retrogenes | |
| Pelodiscus sinensis | ENSPSIG00000018102 | possible_ortholog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000000155 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000010353 | ortholog_one2many | 6 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000002964 | ortholog_one2many | 7 retrogenes | |
| Tupaia belangeri | ENSTBEG00000009586 | possible_ortholog | 7 retrogenes | |
| Tarsius syrichta | ENSTSYG00000005448 | possible_ortholog | 4 retrogenes | |
| Tursiops truncatus | ENSTTRG00000013929 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_38 | 59.74 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_40 | 71.55 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cpor_259 | 57.73 | 82.68 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cpor_325 | 56.32 | 74.03 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cpor_538 | 56.47 | 72.29 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cpor_610 | 90.13 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cpor_720 | 56.80 | 52.38 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cpor_793 | 64.34 | 61.04 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_cpor_814 | 68.71 | 62.34 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_cpor_840 | 53.90 | 58.87 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_cpor_952 | 63.27 | 96.10 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_cpor_1035 | 78.21 | 76.62 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_cpor_1074 | 57.60 | 53.68 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_cpor_1147 | 93.53 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 15. | retro_cpor_1352 | 54.36 | 63.64 | Please wait, loading | Please wait, loading | Please wait, loading |
| 16. | retro_cpor_1360 | 67.24 | 99.57 | Please wait, loading | Please wait, loading | Please wait, loading |
| 17. | retro_cpor_1364 | 61.38 | 62.34 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000013953 retrocopies