RetrogeneDB ID: | retro_hsap_2603 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:2404024..2404422(+) | ||
Located in intron of: | ENSG00000144619 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000230398 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HINT2 | ||
Ensembl ID: | ENSG00000137133 | ||
Aliases: | HINT2, HIT-17 | ||
Description: | histidine triad nucleotide binding protein 2 [Source:HGNC Symbol;Acc:18344] |
Percent Identity: | 76.87 % |
Parental protein coverage: | 81.6 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | GAAGVTDGNEVAKAQQATPGGAAPTIFSRILDKSLPADILYEDQQCLVFRDVAPQAPVHFLVIPKKPIPR |
GA.GVT.GNE..KAQ.A.PGG.APTIF..ILD..LPA.ILYED.QCLVF..VAP.APVHFLVIPKKPIPR | |
Retrocopy | GAVGVTGGNEMTKAQRAIPGGVAPTIFCGILDHRLPAYILYED*QCLVFPEVAP*APVHFLVIPKKPIPR |
Parental | ISQAEEED-QQLLGHLLLVAKQTAKAEGLGDGYRLVINDGKLGAQSVYHLHIHVLGGRQLQWPP |
I.QAEEED.QQLLGHLLLV.K..A.AEGLGDGY.L.IND.KLG.QSV..LHIH.LG..QLQWPP | |
Retrocopy | INQAEEED<QQLLGHLLLVCKKIARAEGLGDGYQLEINDEKLGEQSVNDLHIHLLGS*QLQWPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 10 .83 RPM |
bodymap2_adrenal | 0 .00 RPM | 13 .51 RPM |
bodymap2_brain | 0 .02 RPM | 8 .49 RPM |
bodymap2_breast | 0 .00 RPM | 19 .98 RPM |
bodymap2_colon | 0 .00 RPM | 7 .17 RPM |
bodymap2_heart | 0 .00 RPM | 13 .88 RPM |
bodymap2_kidney | 0 .02 RPM | 21 .12 RPM |
bodymap2_liver | 0 .00 RPM | 29 .87 RPM |
bodymap2_lung | 0 .19 RPM | 7 .86 RPM |
bodymap2_lymph_node | 0 .00 RPM | 3 .86 RPM |
bodymap2_ovary | 0 .00 RPM | 5 .13 RPM |
bodymap2_prostate | 0 .00 RPM | 12 .09 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 8 .04 RPM |
bodymap2_testis | 0 .00 RPM | 10 .14 RPM |
bodymap2_thyroid | 0 .00 RPM | 13 .13 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 6 .58 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1754 |
Gorilla gorilla | retro_ggor_1823 |
Pongo abelii | retro_pabe_2310 |
Macaca mulatta | retro_mmul_1509 |
Callithrix jacchus | retro_cjac_1343 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000011444 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010068 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000000419 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000009083 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000017929 | 1 retrocopy | |
Homo sapiens | ENSG00000137133 | 1 retrocopy |
retro_hsap_2603 ,
|
Homo sapiens | ENSG00000169567 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011265 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000015022 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016337 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000026914 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000027206 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011830 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019082 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000020923 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000003028 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013020 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002700 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000011932 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |