RetrogeneDB ID: | retro_hsap_4891 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | X:110862947..110864087(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000225031 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4B | ||
Ensembl ID: | ENSG00000063046 | ||
Aliases: | EIF4B, EIF-4B, PRO1843 | ||
Description: | eukaryotic translation initiation factor 4B [Source:HGNC Symbol;Acc:3285] |
Percent Identity: | 90.36 % |
Parental protein coverage: | 67.13 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RRGDDSFGDKYRDRYDSDRYRDGYRDGYRDGPRRDMDRYGGRDRYDDRGSRDYDRGYDSRIGSGRRAFGS |
RRGDDSFG....D.Y......D.........PRRDMD.YGGRDRYDD.GSRDYDRGYDSRIGSGRRAFGS | |
Retrocopy | RRGDDSFG----DKYRDRYDSDXXXXXXXXXPRRDMDGYGGRDRYDDQGSRDYDRGYDSRIGSGRRAFGS |
Parental | GYRRDDDYRGGGDRYEDRYDRRDDRSWSSRDDYSRDDYRRDDRGPPQRPKLNLKPRSTPKEDDSSASTSQ |
GYRRDDDYRGGGDRYED.YDRRDDRSWSSRDDYSRDDYR.DDR.PPQRPKLNLKP.ST.K.DDSSASTSQ | |
Retrocopy | GYRRDDDYRGGGDRYED*YDRRDDRSWSSRDDYSRDDYRCDDRRPPQRPKLNLKPWSTLKQDDSSASTSQ |
Parental | STRAASIFGGAKPVDTAAREREVEERLQKEQEKLQRQLDEPKLERRPRERHPSWRSEETQERERSRTGSE |
STRAASIFGGAKPVDTAAREREVEERLQKEQEKLQRQL.EPKLERRPRERHPSWRSEETQERERSRTGSE | |
Retrocopy | STRAASIFGGAKPVDTAAREREVEERLQKEQEKLQRQLSEPKLERRPRERHPSWRSEETQERERSRTGSE |
Parental | SSQTGTSTTSSRNARRRESEKSLENETLNKEEDCHSPTSKPPKPDQPLKVMPAPPPKENAWVKRSSNPPA |
SSQTGTSTTS.RNARRRES.KSLENETLNKEEDCHSPTSKPPKPDQPLKVMPAPPPKENAWVKRSSNPPA | |
Retrocopy | SSQTGTSTTSGRNARRRESKKSLENETLNKEEDCHSPTSKPPKPDQPLKVMPAPPPKENAWVKRSSNPPA |
Parental | RSQSSDTEQQSPTSGGGKVAPAQPSEEGPGRKDENKVDGMNAPKGQTGNSSRGPGDGGNRDHWKESDRKD |
RSQSSD.EQQSPTSGGGKVAPAQPSEEGP.R.DENKVDGMN.PKGQTGNSSRGPGDGGN.DHWKESDRKD | |
Retrocopy | RSQSSDAEQQSPTSGGGKVAPAQPSEEGPARQDENKVDGMNVPKGQTGNSSRGPGDGGNKDHWKESDRKD |
Parental | GKKDQDSRSAPEPKKPEENPASKFSSASKYAALS |
GKKDQDSRSAPEPKKPEENPASKFSSAS.YAALS | |
Retrocopy | GKKDQDSRSAPEPKKPEENPASKFSSASNYAALS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 8 .09 RPM | 703 .14 RPM |
bodymap2_adrenal | 3 .68 RPM | 434 .24 RPM |
bodymap2_brain | 1 .64 RPM | 232 .88 RPM |
bodymap2_breast | 3 .81 RPM | 442 .03 RPM |
bodymap2_colon | 6 .77 RPM | 722 .93 RPM |
bodymap2_heart | 1 .42 RPM | 297 .04 RPM |
bodymap2_kidney | 1 .28 RPM | 206 .91 RPM |
bodymap2_liver | 0 .17 RPM | 106 .15 RPM |
bodymap2_lung | 1 .18 RPM | 407 .72 RPM |
bodymap2_lymph_node | 1 .17 RPM | 454 .43 RPM |
bodymap2_ovary | 13 .26 RPM | 1147 .94 RPM |
bodymap2_prostate | 1 .51 RPM | 826 .01 RPM |
bodymap2_skeletal_muscle | 3 .36 RPM | 1007 .06 RPM |
bodymap2_testis | 3 .71 RPM | 372 .14 RPM |
bodymap2_thyroid | 3 .94 RPM | 489 .01 RPM |
bodymap2_white_blood_cells | 2 .03 RPM | 716 .99 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018176 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000005595 | 3 retrocopies | |
Homo sapiens | ENSG00000063046 | 7 retrocopies |
retro_hsap_1686, retro_hsap_2639, retro_hsap_2698, retro_hsap_3767, retro_hsap_4196, retro_hsap_4848, retro_hsap_4891 ,
|
Gorilla gorilla | ENSGGOG00000013695 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000009534 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012341 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000001062 | 5 retrocopies | |
Mus musculus | ENSMUSG00000058655 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017727 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000025848 | 7 retrocopies | |
Rattus norvegicus | ENSRNOG00000010103 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000006800 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005423 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .34 RPM |
CEU_NA11843 | 0 .28 RPM |
CEU_NA11930 | 0 .46 RPM |
CEU_NA12004 | 0 .34 RPM |
CEU_NA12400 | 0 .28 RPM |
CEU_NA12751 | 0 .46 RPM |
CEU_NA12760 | 0 .81 RPM |
CEU_NA12827 | 0 .47 RPM |
CEU_NA12872 | 0 .71 RPM |
CEU_NA12873 | 0 .77 RPM |
FIN_HG00183 | 0 .41 RPM |
FIN_HG00277 | 0 .41 RPM |
FIN_HG00315 | 0 .50 RPM |
FIN_HG00321 | 0 .27 RPM |
FIN_HG00328 | 0 .50 RPM |
FIN_HG00338 | 0 .40 RPM |
FIN_HG00349 | 0 .31 RPM |
FIN_HG00375 | 0 .37 RPM |
FIN_HG00377 | 0 .25 RPM |
FIN_HG00378 | 0 .36 RPM |
GBR_HG00099 | 0 .44 RPM |
GBR_HG00111 | 0 .13 RPM |
GBR_HG00114 | 0 .32 RPM |
GBR_HG00119 | 0 .45 RPM |
GBR_HG00131 | 0 .75 RPM |
GBR_HG00133 | 0 .43 RPM |
GBR_HG00134 | 0 .26 RPM |
GBR_HG00137 | 0 .36 RPM |
GBR_HG00142 | 0 .42 RPM |
GBR_HG00143 | 0 .38 RPM |
TSI_NA20512 | 0 .14 RPM |
TSI_NA20513 | 0 .29 RPM |
TSI_NA20518 | 0 .69 RPM |
TSI_NA20532 | 0 .24 RPM |
TSI_NA20538 | 0 .60 RPM |
TSI_NA20756 | 0 .61 RPM |
TSI_NA20765 | 0 .31 RPM |
TSI_NA20771 | 0 .60 RPM |
TSI_NA20786 | 0 .47 RPM |
TSI_NA20798 | 0 .44 RPM |
YRI_NA18870 | 0 .27 RPM |
YRI_NA18907 | 0 .28 RPM |
YRI_NA18916 | 0 .23 RPM |
YRI_NA19093 | 0 .26 RPM |
YRI_NA19099 | 0 .21 RPM |
YRI_NA19114 | 0 .55 RPM |
YRI_NA19118 | 0 .21 RPM |
YRI_NA19213 | 0 .62 RPM |
YRI_NA19214 | 0 .25 RPM |
YRI_NA19223 | 0 .32 RPM |