Parental gene: | EIF4B, ENSCJAG00000018176 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 9:41851458..41888445(+) |
>ENSCJAG00000018176
ATGGCGGCCTCAGCAAAAAAGAAGAATAAGAAGGGGAAGACTATCTCCCTTACAGACTTTCTGGCTGAGGATGGGGGAAC
TGGTGGAGGAAGCACCTATGTTTCCAAACCAGTCAGCTGGGCTGATGAAACAGATGACCTGGAAGGAGATGTTTCAACAA
CTTGGCACAGTAATGACGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATCCTTCCCACTGCTCCACGGGCTGCT
CGGGAACCCAATATCGACCGGAGCCGTCTTCCCAAATCACCACCCTACACTGCTTTTCTAGGGAACCTACCCTATGATGT
GACAGAAGAGTCAATTAAGGAATTCTTCAGAGGATTAAATATCAGTGCGGTGCGTTTACCACGTGAACCCAGCAATCCAG
AGAGGTTGAAAGGTTTTGGTTATGCTGAATTTGAGGACCTGGATTCCCTGCTTAGTGCCCTGAGTCTCAATGAAGAGTCT
CTAGGTAACAGGAGAATTCGAGTGGACGTTGCTGATCAAGCACAGGATAAAGACAGGGACGATCGTTCTTTTGGCCGTGA
TAGAAATCGGGATTCTGACAAAACAGATACAGACTGGAGGGCTCGTCCTGCCACAGATAGCTTTGATGACTACCCGCCTA
GAAGAGGTGATGATAGCTTTGGAGACAAGTATCGAGATCGTTATGATTCAGACCGGTATCGCGATGGGTATCGGGATGGG
TACCGGGATGGCCCTCGCCGGGATATGGATCGATATGGCGGCCGGGATCGCTATGATGACCGAGGGAGCAGAGACTATGA
TAGAGGCTATGACTCCCGGATAGGCAGCGGCAGAAGAGCATTTGGCAGTGGATACCGCAGGGATGATGACTACAGAGGAG
GCGGGGACCGCTTTGAAGACCGATATTACAGACGGGATAATCGGTCATGGAGCTCCAGAGATGATTATTCTTGGGATGAT
TATAGGCGTGATGATAGAAGTCTGCCCCACAGACCCAAACTGAATCTAAAGCCTTGGAGTACTCCTAAGGAAGATGATTC
CTCTGCTAGTACCTCCCAGTCCAGTCGAGCTGCTTCTATCTTTGGAGGGGCAAAACCCGTTGACACAGCTGCTAGAGAAA
GAGAAGTAGAAGAACGACTACAGAAGGAACAAGAGAAGTTGCAGCGTCAGCTGGACGAGCCAAAACTAGAAAGACGGCCT
CGGGAGAGACACCCAAGCTGGCGGAGTGAAGAAACTCAGGAACGGGAACGGTCAAGGACAGGAAGTGAGTCGTCGCAGAC
TGGGACTTCCGCCACATCTGGCAGAAGTAAGTCAGACCAGGATGCACGAAGGAGAGAGAGTGAGAAGTCTCTAGAAAATG
AAACACTCAGTAAGGAGGAAGATTGTCACTCTCCAACTTCTAAACCTCCCAAACCTGATCAGCCCCTAAAGGTAATGCCA
GCCCCTCCACCAAAGGAGAATGCTTGGGTGAAGCGAAGTTCTAACCCTCCTGCTCGATCTCAGAGCTCAGACACAGAGCA
GCAATCCCCTACAAGTGGTGGGGGCAAAGTGGCTCCAGCTCAACCATCTGAGGAAGGACCAGCCAGGAAAGATGAAAATA
AAATAGATGGGATGAATGTCCCGAAAGGCCAAACTGGGAACTCCAGCCGTGGTCCAGGAGACGGAGTGAACAAAGACCAC
TGGAAGGAGTCAGATCGGAAAGATGGCAAAAAGGATCAAGACTCCAGATCTGCACCTGAGCCAAAGAAACCTGAGGAAAA
TCCAGCTTCCATGTTCAGTTCTGCGAGCAAGTATGCTGCTCTCTCCGTTGATGGTGAAGATGAAAACGAGGGAGAAGATT
ATGCCGAATAG
ATGGCGGCCTCAGCAAAAAAGAAGAATAAGAAGGGGAAGACTATCTCCCTTACAGACTTTCTGGCTGAGGATGGGGGAAC
TGGTGGAGGAAGCACCTATGTTTCCAAACCAGTCAGCTGGGCTGATGAAACAGATGACCTGGAAGGAGATGTTTCAACAA
CTTGGCACAGTAATGACGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATCCTTCCCACTGCTCCACGGGCTGCT
CGGGAACCCAATATCGACCGGAGCCGTCTTCCCAAATCACCACCCTACACTGCTTTTCTAGGGAACCTACCCTATGATGT
GACAGAAGAGTCAATTAAGGAATTCTTCAGAGGATTAAATATCAGTGCGGTGCGTTTACCACGTGAACCCAGCAATCCAG
AGAGGTTGAAAGGTTTTGGTTATGCTGAATTTGAGGACCTGGATTCCCTGCTTAGTGCCCTGAGTCTCAATGAAGAGTCT
CTAGGTAACAGGAGAATTCGAGTGGACGTTGCTGATCAAGCACAGGATAAAGACAGGGACGATCGTTCTTTTGGCCGTGA
TAGAAATCGGGATTCTGACAAAACAGATACAGACTGGAGGGCTCGTCCTGCCACAGATAGCTTTGATGACTACCCGCCTA
GAAGAGGTGATGATAGCTTTGGAGACAAGTATCGAGATCGTTATGATTCAGACCGGTATCGCGATGGGTATCGGGATGGG
TACCGGGATGGCCCTCGCCGGGATATGGATCGATATGGCGGCCGGGATCGCTATGATGACCGAGGGAGCAGAGACTATGA
TAGAGGCTATGACTCCCGGATAGGCAGCGGCAGAAGAGCATTTGGCAGTGGATACCGCAGGGATGATGACTACAGAGGAG
GCGGGGACCGCTTTGAAGACCGATATTACAGACGGGATAATCGGTCATGGAGCTCCAGAGATGATTATTCTTGGGATGAT
TATAGGCGTGATGATAGAAGTCTGCCCCACAGACCCAAACTGAATCTAAAGCCTTGGAGTACTCCTAAGGAAGATGATTC
CTCTGCTAGTACCTCCCAGTCCAGTCGAGCTGCTTCTATCTTTGGAGGGGCAAAACCCGTTGACACAGCTGCTAGAGAAA
GAGAAGTAGAAGAACGACTACAGAAGGAACAAGAGAAGTTGCAGCGTCAGCTGGACGAGCCAAAACTAGAAAGACGGCCT
CGGGAGAGACACCCAAGCTGGCGGAGTGAAGAAACTCAGGAACGGGAACGGTCAAGGACAGGAAGTGAGTCGTCGCAGAC
TGGGACTTCCGCCACATCTGGCAGAAGTAAGTCAGACCAGGATGCACGAAGGAGAGAGAGTGAGAAGTCTCTAGAAAATG
AAACACTCAGTAAGGAGGAAGATTGTCACTCTCCAACTTCTAAACCTCCCAAACCTGATCAGCCCCTAAAGGTAATGCCA
GCCCCTCCACCAAAGGAGAATGCTTGGGTGAAGCGAAGTTCTAACCCTCCTGCTCGATCTCAGAGCTCAGACACAGAGCA
GCAATCCCCTACAAGTGGTGGGGGCAAAGTGGCTCCAGCTCAACCATCTGAGGAAGGACCAGCCAGGAAAGATGAAAATA
AAATAGATGGGATGAATGTCCCGAAAGGCCAAACTGGGAACTCCAGCCGTGGTCCAGGAGACGGAGTGAACAAAGACCAC
TGGAAGGAGTCAGATCGGAAAGATGGCAAAAAGGATCAAGACTCCAGATCTGCACCTGAGCCAAAGAAACCTGAGGAAAA
TCCAGCTTCCATGTTCAGTTCTGCGAGCAAGTATGCTGCTCTCTCCGTTGATGGTGAAGATGAAAACGAGGGAGAAGATT
ATGCCGAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 231 .93 RPM |
| SRP051959_skeletal_muscle | 200 .47 RPM |
| SRP051959_lymph_node | 224 .10 RPM |
| SRP051959_lung | 199 .21 RPM |
| SRP051959_liver | 184 .59 RPM |
| SRP051959_kidney | 193 .02 RPM |
| SRP051959_heart | 187 .14 RPM |
| SRP051959_colon | 171 .18 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000005595 | ortholog_one2many | 3 retrogenes | |
| Homo sapiens | ENSG00000063046 | ortholog_one2one | 7 retrogenes | |
| Gorilla gorilla | ENSGGOG00000013695 | ortholog_one2many | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000009534 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000012341 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000001062 | ortholog_one2many | 5 retrogenes | |
| Mus musculus | ENSMUSG00000058655 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017727 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000025848 | ortholog_one2one | 7 retrogenes | |
| Rattus norvegicus | ENSRNOG00000010103 | possible_ortholog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000006800 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000005423 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1717 | 81.26 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2001 | 78.52 | 80.22 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000018176 retrocopies