RetrogeneDB ID: | retro_tbel_4167 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_69566:583..1526(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4B | ||
Ensembl ID: | ENSTBEG00000005423 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4B [Source:HGNC Symbol;Acc:3285] |
Percent Identity: | 67.51 % |
Parental protein coverage: | 51.07 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | GDRYEDRYDRRDDRSWSSRDDYSRDDYRRDDRGPPQRPKLNLKPRSTPKEDDSSASTSQSSRAASIFGGA |
GDRYEDRYDR.DDRS.SSRDDYSRDDYRRDDRGPPQRP.LNLKP.STPKEDDSSASTSQS....S.F..A | |
Retrocopy | GDRYEDRYDRWDDRS*SSRDDYSRDDYRRDDRGPPQRPTLNLKPWSTPKEDDSSASTSQSC*VTSVFREA |
Parental | KPVDTAARER---EVEERLQKEQEKLQR-QLDEPKLERRPRERHPSWRSEETQERERSRTGSESSQTGTS |
KP...AARE...........K.Q..L....L.....E..P.........EE.............S..... | |
Retrocopy | KPANIAAREEVGEKLQKEQEKLQRQLDEPKLERWPRESHPSWQSEETQEEERSRTGSESSQTGASAASGR |
Parental | ATSGRNARRRESEKSLENETLSKEEDCHSPTSKPPKPDQPLKVMPAPPPKENAW-ERSSNPPARSQSSDT |
..S...A.RRES..SLEN.TL.KEEDCHSP.SKPPK.DQPLKVMPA.PPKEN.W..RSSNPPA..QSSD. | |
Retrocopy | SKSAQEA*RRESARSLENKTLRKEEDCHSPMSKPPKRDQPLKVMPALPPKENTWVKRSSNPPAQAQSSDM |
Parental | EQQSPTSGGGKVASAQLSEEGQARRDENKVDGMSVPKGQTGNSSRGPGDGGNKD-HWKESERKDGKKDQD |
EQQSPTS.GGKV.SAQ.SEEG.AR.D.NK.DGMSVPKGQTGNSSRGPGDGGN.D.HWKES.RK.G.KDQD | |
Retrocopy | EQQSPTSAGGKVPSAQPSEEGPARKDDNKADGMSVPKGQTGNSSRGPGDGGNED<HWKESYRKEGRKDQD |
Parental | SRSAPE-PKKPEENPASKFSSASKYAALSVDGEDENE |
SRSAP..PK.PEEN.ASKFSSAS.YAALSVDG.DENE | |
Retrocopy | SRSAPG<PKEPEENSASKFSSASSYAALSVDGADENE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018176 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000005595 | 3 retrocopies | |
Homo sapiens | ENSG00000063046 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000013695 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000009534 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012341 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000001062 | 5 retrocopies | |
Mus musculus | ENSMUSG00000058655 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017727 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000025848 | 7 retrocopies | |
Rattus norvegicus | ENSRNOG00000010103 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000006800 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005423 | 2 retrocopies |
retro_tbel_2363, retro_tbel_4167 ,
|
Tupaia belangeri | ENSTBEG00000009558 | 2 retrocopies |