RetrogeneDB ID: retro_hsap_68

Retrocopy location

• Organism: Human (Homo sapiens)
• Coordinates: 14:65007567..65009487(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSG00000126803
• Aliases: HSPA2, HSP70-2, HSP70-3
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: HSPA8
• Ensembl ID: ENSG00000109971
• Aliases: HSPA8, HEL-33, HEL-S-72p, HSC54, HSC70, HSC71, HSP71, HSP73, HSPA10, LAP1, NIP71
• Description: heat shock 70kDa protein 8 [Source:HGNC Symbol;Acc:5241]

Sequence

>retro_hsap_68
ATGTCTGCCCGTGGCCCGGCTATCGGCATCGACCTGGGCACCACCTATTCGTGCGTCGGGGTCTTCCAACATGGCAAGGT
GGAGATCATCGCCAACGACCAGGGCAATCGCACCACCCCCAGCTACGTGGCCTTCACGGACACCGAGCGCCTCATCGGCG
ACGCCGCCAAGAACCAGGTGGCCATGAACCCCACCAACACCATCTTCGACGCCAAGAGGCTGATTGGACGGAAATTCGAG
GATGCCACAGTGCAGTCGGATATGAAACACTGGCCGTTCCGGGTGGTGAGCGAGGGAGGCAAGCCCAAAGTGCAAGTAGA
GTACAAGGGGGAGACCAAGACCTTCTTCCCAGAGGAGATATCCTCCATGGTCCTCACGAAGATGAAGGAGATCGCGGAAG
CCTACCTGGGGGGCAAGGTGCACAGCGCGGTCATAACGGTCCCGGCCTATTTCAACGACTCGCAGCGCCAGGCCACCAAG
GACGCAGGCACCATCACGGGGCTCAATGTGCTGCGCATCATCAACGAGCCCACGGCGGCGGCCATCGCCTACGGCCTGGA
CAAGAAGGGCTGCGCGGGCGGCGAGAAGAACGTGCTCATCTTTGACCTGGGCGGTGGCACTTTCGACGTGTCCATCCTGA
CCATCGAGGATGGCATCTTCGAGGTGAAGTCCACGGCCGGCGACACCCACCTGGGCGGTGAGGACTTCGACAACCGCATG
GTGAGCCACCTGGCGGAGGAGTTCAAGCGCAAGCACAAGAAGGACATTGGGCCCAACAAGCGCGCCGTGAGGCGGCTGCG
CACCGCTTGCGAGCGCGCCAAGCGCACCCTGAGCTCGTCCACGCAGGCGAGCATCGAGATCGACTCGCTCTACGAGGGCG
TGGACTTCTATACGTCCATCACGCGCGCCCGCTTCGAGGAGCTCAATGCCGACCTCTTTCGCGGGACCCTGGAGCCGGTG
GAGAAGGCGCTGCGCGACGCCAAGCTGGACAAGGGCCAGATCCAGGAGATCGTGCTGGTGGGCGGCTCCACTCGTATCCC
CAAGATCCAGAAGCTGCTGCAGGATTTCTTCAACGGCAAGGAGCTGAACAAGAGCATCAACCCCGACGAGGCGGTGGCCT
ATGGCGCCGCGGTGCAGGCGGCCATCCTCATCGGCGACAAATCAGAGAATGTGCAGGACCTGCTGCTACTCGACGTGACC
CCGTTGTCGCTGGGCATCGAGACAGCTGGCGGTGTCATGACCCCACTCATCAAGAGGAACACCACGATCCCCACCAAGCA
GACGCAGACCTTCACCACCTACTCGGACAACCAGAGCAGCGTACTGGTGCAGGTATACGAGGGCGAACGGGCCATGACCA
AGGACAATAACCTGCTGGGCAAGTTCGACCTGACCGGGATTCCCCCTGCGCCTCGCGGGGTCCCCCAAATCGAGGTTACC
TTCGACATTGACGCCAATGGCATCCTTAACGTTACCGCCGCCGACAAGAGCACCGGTAAGGAAAACAAAATCACCATCAC
CAATGACAAAGGTCGTCTGAGCAAGGACGACATTGACCGGATGGTGCAGGAGGCGGAGCGGTACAAATCGGAAGATGAGG
CGAATCGCGACCGAGTCGCGGCCAAAAACGCCCTGGAGTCCTATACCTACAACATCAAGCAGACGGTGGAAGACGAGAAA
CTGAGGGGCAAGATTAGCGAGCAGGACAAAAACAAGATCCTCGACAAGTGTCAGGAGGTGATCAACTGGCTCGACCGAAA
CCAGATGGCAGAGAAAGATGAGTATGAACACAAGCAGAAAGAGCTCGAAAGAGTTTGCAACCCCATCATCAGCAAACTTT
ACCAAGGTGGTCCTGGCGGCGGCAGCGGCGGCGGCGGTTCAGGAGCCTCCGGGGGACCCACCATCGAAGAAGTGGACTAA

Alignment

ORF - retro_hsap_68 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.24 %
• Parental protein coverage: 99.85 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAK
          ..GPA.GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNT.FDAK
Retrocopy ARGPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAK

Parental  RLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTN
          RLIGR.F.DA.VQSDMKHWPF.VV...G.PKVQVEYKGETK.F.PEE.SSMVLTKMKEIAEAYLG..V..
Retrocopy RLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHS

Parental  AVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKK--VGAERNVLIFDLGGGTFDVSI
          AV.TVPAYFNDSQRQATKDAGTI.GLNVLRIINEPTAAAIAYGLDKK...G.E.NVLIFDLGGGTFDVSI
Retrocopy AVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSI

Parental  LTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQ
          LTIEDGIFEVKSTAGDTHLGGEDFDNRMV.H...EFKRKHKKDI..NKRAVRRLRTACERAKRTLSSSTQ
Retrocopy LTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQ

Parental  ASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKL
          ASIEIDSLYEG.DFYTSITRARFEELNADLFRGTL.PVEKALRDAKLDK.QI..IVLVGGSTRIPKIQKL
Retrocopy ASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKL

Parental  LQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTT
          LQDFFNGKELNKSINPDEAVAYGAAVQAAIL.GDKSENVQDLLLLDVTPLSLGIETAGGVMT.LIKRNTT
Retrocopy LQDFFNGKELNKSINPDEAVAYGAAVQAAILIGDKSENVQDLLLLDVTPLSLGIETAGGVMTPLIKRNTT

Parental  IPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVS
          IPTKQTQTFTTYSDNQ..VL.QVYEGERAMTKDNNLLGKF.LTGIPPAPRGVPQIEVTFDIDANGILNV.
Retrocopy IPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNVT

Parental  AVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQ
          A.DKSTGKENKITITNDKGRLSK.DI.RMVQEAE.YK.EDE..RD.V..KN.LESY..N.K.TVEDEKL.
Retrocopy AADKSTGKENKITITNDKGRLSKDDIDRMVQEAERYKSEDEANRDRVAAKNALESYTYNIKQTVEDEKLR

Parental  GKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGG
          GKI...DK.KILDKC.E.INWLD.NQ.AEK.E.EH.QKELE.VCNPII.KLYQ...G.PGG..GG...GG
Retrocopy GKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ---GGPGGGSGG---GG

Parental  APPSGGASSGPTIEEVD
          ...SGG....PTIEEVD
Retrocopy SGASGG----PTIEEVD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
bodymap2_adipose	7.24 RPM	378.65 RPM
bodymap2_adrenal	20.69 RPM	331.67 RPM
bodymap2_brain	136.49 RPM	863.93 RPM
bodymap2_breast	13.64 RPM	569.52 RPM
bodymap2_colon	73.44 RPM	1201.80 RPM
bodymap2_heart	10.39 RPM	645.86 RPM
bodymap2_kidney	55.90 RPM	1396.28 RPM
bodymap2_liver	1.37 RPM	656.44 RPM
bodymap2_lung	14.82 RPM	884.51 RPM
bodymap2_lymph_node	15.50 RPM	1648.41 RPM
bodymap2_ovary	14.69 RPM	901.10 RPM
bodymap2_prostate	23.97 RPM	540.08 RPM
bodymap2_skeletal_muscle	7.06 RPM	473.34 RPM
bodymap2_testis	130.58 RPM	864.58 RPM
bodymap2_thyroid	23.99 RPM	1387.20 RPM
bodymap2_white_blood_cells	0.69 RPM	1500.51 RPM

ChIP-Seq

RNA Polymerase II actvity may be related with retro_hsap_68 in 40 libraries

ENCODE library ID	Target	ChIP-Seq Peak coordinates
ENCFF002CFW	POLR2A	14:65007304..65007764
ENCFF002CFW	POLR2A	14:65006807..65007204
ENCFF002CFX	POLR2A	14:65007304..65007758
ENCFF002CFX	POLR2A	14:65006816..65007221
ENCFF002CGN	POLR2A	14:65007339..65007641
ENCFF002CGN	POLR2A	14:65006821..65007110
ENCFF002CGN	POLR2A	14:65006131..65006595
ENCFF002CHO	POLR2A	14:65007282..65007729
ENCFF002CIH	POLR2A	14:65007432..65007571
ENCFF002CIO	POLR2A	14:65007312..65007681
ENCFF002CJE	POLR2A	14:65007248..65007757
ENCFF002CJE	POLR2A	14:65006281..65006917
ENCFF002CJZ	POLR2A	14:65006768..65007167
ENCFF002CJZ	POLR2A	14:65006389..65006939
ENCFF002CKX	POLR2A	14:65006909..65007135
ENCFF002CLM	POLR2A	14:65007201..65007741
ENCFF002CLM	POLR2A	14:65006367..65006907
ENCFF002COJ	POLR2A	14:65007228..65007664
ENCFF002CPG	POLR2A	14:65007392..65007609
ENCFF002CPH	POLR2A	14:65007277..65007667
ENCFF002CQA	POLR2A	14:65007405..65007610
ENCFF002CQC	POLR2A	14:65007315..65007669
ENCFF002CQE	POLR2A	14:65007324..65007657
ENCFF002CQG	POLR2A	14:65007348..65007614
ENCFF002CQI	POLR2A	14:65007320..65007661
ENCFF002CQK	POLR2A	14:65007308..65007676
ENCFF002CQM	POLR2A	14:65007329..65007638
ENCFF002CQO	POLR2A	14:65007354..65007671
ENCFF002CRK	POLR2A	14:65006729..65007253
ENCFF002CRO	POLR2A	14:65006749..65007169
ENCFF002CRO	POLR2A	14:65007292..65007712
ENCFF002CSY	POLR2A	14:65006747..65007234
ENCFF002CSY	POLR2A	14:65006540..65006851
ENCFF002CUP	POLR2A	14:65006805..65007121
ENCFF002CUQ	POLR2A	14:65006741..65007245
ENCFF002CVF	POLR2A	14:65007343..65007626
ENCFF002CVJ	POLR2A	14:65007257..65007705
ENCFF002CZC	POLR2A	14:65007258..65007692
ENCFF002CZC	POLR2A	14:65006780..65007143
ENCFF002CZD	POLR2A	14:65007275..65007675
ENCFF002CZW	POLR2A	14:65007225..65007770
ENCFF002CZY	POLR2A	14:65006873..65007142
ENCFF002DAE	POLR2A	14:65007377..65007622
ENCFF002DAE	POLR2A	14:65006836..65007146
ENCFF002DAS	POLR2A	14:65007237..65007713
ENCFF002DAV	POLR2A	14:65006708..65007252
ENCFF002DBB	POLR2A	14:65007387..65007587
ENCFF002DBB	POLR2A	14:65006881..65007081
ENCFF002DBO	POLR2A	14:65007346..65007650
ENCFF002DBO	POLR2A	14:65006821..65007153
ENCFF002DBP	POLR2A	14:65007353..65007635
ENCFF002DBP	POLR2A	14:65006844..65007117
ENCFF002DBQ	POLR2A	14:65007390..65007586
ENCFF002DBQ	POLR2A	14:65006873..65007065
ENCFF002DBT	POLR2A	14:65007367..65007619
ENCFF002DBT	POLR2A	14:65006777..65007147

EST

200 EST(s) were mapped to retro_hsap_68 retrocopy

EST ID	Start	End	Identity	Match	Mis-match	Score
AL044984	65008101	65008703	99.9	601	1	600
AL046354	65007688	65008189	100	501	0	501
BE894081	65007867	65008582	99.1	700	1	688
BE894894	65007501	65008190	98.1	680	0	668
BF969405	65007779	65008539	99.7	751	1	743
BG037156	65007463	65008150	99.1	658	5	643
BG331894	65007722	65008374	96.1	628	7	609
BG476580	65007478	65008272	95.2	770	6	738
BG699527	65008101	65008739	99.9	635	1	632
BG701913	65007462	65008145	98.6	678	4	670
BG704017	65007462	65008296	98.7	807	4	788
BG716913	65007466	65008076	100	610	0	610
BG717819	65007458	65008156	99.8	695	1	691
BG724346	65007462	65008137	97.2	669	5	656
BG759101	65007830	65008479	99.9	648	1	647
BG771669	65007462	65008235	97.8	767	3	753
BG772001	65007462	65008261	99.5	784	2	776
BG772257	65007462	65008211	97	738	5	718
BG772613	65007462	65008118	98.1	653	3	645
BI085619	65008000	65008812	97.8	809	3	798
BI094536	65007595	65008539	98.9	686	3	674
BI463605	65007459	65008266	98.5	789	2	774
BI544491	65007448	65008299	96.8	834	5	809
BI550887	65007457	65008098	99.9	638	1	635
BI560802	65007462	65008342	96.1	782	9	757
BI562664	65007448	65008254	97.1	789	3	769
BI596909	65007448	65008209	99	752	3	743
BI601270	65007448	65008233	98.8	763	9	745
BI601546	65007394	65008302	96.8	821	8	790
BI604199	65007459	65008099	97.4	635	5	624
BI667585	65007515	65008264	97.5	732	3	717
BI668472	65007463	65008153	97.6	686	3	674
BI761630	65007481	65008067	100	586	0	586
BI761806	65007475	65008229	98.6	751	1	743
BM017695	65007956	65008770	97.3	810	3	794
BM453285	65007498	65008262	98.9	759	4	753
BM471796	65007468	65008266	98.3	791	7	781
BM706658	65007478	65008100	100	622	0	622
BM905244	65007475	65008290	98.4	792	3	782
BP214223	65007458	65008046	99.9	587	1	586
BP214389	65007458	65008511	98.9	590	5	582
BP214418	65007458	65008057	99.7	597	2	595
BP214723	65007459	65008042	100	583	0	583
BP215418	65007460	65008042	99.9	581	1	580
BP216662	65007461	65008044	99.9	582	1	581
BP280320	65007463	65008051	100	588	0	588
BP320268	65007459	65008047	100	588	0	588
BP360968	65007458	65008046	99.5	585	3	582
BP371837	65008218	65008800	99.9	581	1	580
BP374622	65007460	65008043	100	583	0	583
BQ232549	65007553	65008435	97.3	855	7	832
BQ339091	65008029	65008601	99.7	567	2	562
BQ431623	65007533	65008353	97.8	812	2	799
BQ435120	65007481	65008246	99.3	761	0	758
BQ441040	65007484	65008321	95.8	826	5	798
BQ670728	65007468	65008212	99.5	720	3	714
BQ676345	65007857	65008572	99.3	709	5	703
BQ719746	65007486	65008161	97.5	673	0	662
BU161469	65007485	65008181	98.4	655	5	647
BU167405	65007488	65008190	97.1	690	12	674
BU182828	65007553	65008145	97.3	585	2	575
BU187966	65007959	65008785	99	817	3	810
BU188162	65007487	65008283	96.6	773	11	749
BU188598	65007485	65008343	98.6	849	6	841
BX338028	65007482	65008480	98.7	958	8	939
BX359218	65007494	65008453	99	939	9	926
BX359765	65007479	65008302	99.8	814	2	810
BX360652	65007476	65008406	99.5	916	4	909
BX381080	65007479	65008528	98.6	1026	12	1013
BX428790	65007470	65008406	99.3	910	3	899
BX450649	65008091	65008848	98.3	749	6	737
BX459030	65007470	65008241	100	762	0	762
CA392607	65007866	65008514	99.9	647	1	646
CB152018	65007458	65008097	100	638	0	638
CB155424	65007458	65008045	100	587	0	587
CB155883	65007530	65008119	99.9	588	1	587
CB215388	65007475	65008107	100	632	0	632
CB988234	65007458	65008149	96.7	679	0	662
CD251862	65007490	65008298	98.9	806	2	801
CD252010	65007486	65008346	97.3	833	8	814
CD299958	65007471	65008298	98	811	2	799
CD300159	65007795	65008608	98.4	804	3	793
CD300195	65007847	65008701	99	843	2	834
CD300438	65007724	65008555	97.6	823	7	808
CD358704	65007904	65008520	99.1	613	2	608
CD514561	65007483	65008396	99.7	862	0	858
CD653825	65007510	65008272	99.7	761	0	760
CN356508	65007751	65008227	100	476	0	476
CV024696	65007567	65008205	99.6	635	3	632
CV025662	65007567	65008169	99.7	600	2	598
DA057147	65007458	65008066	99.9	607	1	606
DA075637	65007458	65008044	100	586	0	586
DA133516	65007863	65008428	99.3	564	1	562
DA139262	65007458	65008082	100	624	0	624
DA139403	65007458	65008077	100	619	0	619
DA139409	65007458	65008076	100	618	0	618
DA140888	65007458	65008082	100	624	0	624
DA145059	65007459	65008045	100	586	0	586
DA149843	65007458	65008051	100	593	0	593
DA154252	65007458	65008047	100	589	0	589
DA201491	65007458	65008047	100	589	0	589
DA201581	65007458	65008053	99.7	593	2	591
DA201703	65007458	65008451	100	634	0	633
DA201747	65007458	65008083	99.6	625	0	624
DA201797	65007458	65008081	100	623	0	623
DA202671	65008015	65008597	99.7	579	2	576
DA204759	65007458	65008046	99.9	587	1	586
DA205777	65007458	65008051	100	593	0	593
DA240351	65007458	65008064	100	606	0	606
DA253528	65007458	65008042	100	584	0	584
DA254005	65007458	65008048	99.9	589	1	588
DA255673	65007615	65008133	100	518	0	518
DA260197	65007802	65008372	99.9	569	1	568
DA265713	65007458	65008044	100	586	0	586
DA269471	65007458	65008100	99.9	641	1	640
DA279428	65007458	65008047	99.9	588	1	587
DA281221	65007458	65008044	100	586	0	586
DA286463	65007667	65008229	100	562	0	562
DA287417	65007458	65008043	100	585	0	585
DA287480	65007458	65008044	100	586	0	586
DA290668	65007458	65008045	100	587	0	587
DA293759	65007458	65008043	100	585	0	585
DA298240	65007458	65008052	100	594	0	594
DA300093	65007459	65008045	100	586	0	586
DA301795	65007458	65008046	100	588	0	588
DA301894	65007458	65008047	100	589	0	589
DA302296	65007460	65008051	100	591	0	591
DA303437	65007458	65008048	100	590	0	590
DA303535	65007457	65008048	99.9	590	1	589
DA305259	65007461	65008041	100	580	0	580
DA307036	65007458	65008041	100	583	0	583
DA307510	65007458	65008051	100	593	0	593
DA307570	65007458	65008056	100	598	0	598
DA308123	65007458	65008046	100	587	0	587
DA308334	65007458	65008052	99.9	593	1	592
DA309690	65007459	65008065	100	606	0	606
DA342393	65007770	65008337	99.9	566	1	565
DA343139	65007458	65008046	100	588	0	588
DA343159	65007458	65008052	100	594	0	594
DA343196	65007458	65008049	99.9	590	1	589
DA346329	65007458	65008051	100	593	0	593
DA349811	65007459	65008046	100	587	0	587
DA353020	65007458	65008042	100	584	0	584
DA354233	65007458	65008043	100	585	0	585
DA354277	65007460	65008053	99.9	591	1	590
DA384728	65007458	65008047	100	589	0	589
DA386304	65007458	65008052	100	594	0	594
DA386337	65007458	65008041	100	583	0	583
DA387058	65007458	65008065	100	607	0	607
DA388049	65007458	65008050	100	592	0	592
DA388472	65007458	65008056	100	598	0	598
DA391676	65007458	65008048	100	590	0	590
DA391740	65007458	65008046	99.9	587	1	586
DA391847	65007458	65008042	100	584	0	584
DA392131	65007458	65008056	100	598	0	598
DA392251	65007458	65008045	99.9	586	1	585
DA392361	65007458	65008049	99.9	590	1	589
DA394394	65007454	65008044	100	590	0	590
DA394513	65007458	65008051	100	593	0	593
DA394616	65007458	65008057	100	599	0	599
DA395250	65007458	65008055	100	597	0	597
DA397431	65007458	65008052	99.9	593	1	592
DA397692	65007458	65008061	99.6	600	2	596
DA397859	65007460	65008053	99.9	592	1	591
DA397967	65007458	65008055	100	597	0	597
DA435150	65007458	65008044	100	586	0	586
DA441135	65007458	65008041	100	583	0	583
DA581031	65007458	65008210	97.6	744	4	730
DA619893	65007458	65008044	100	586	0	586
DA634334	65007458	65008065	100	607	0	607
DA635825	65007460	65008049	99.9	588	1	587
DA846773	65007458	65008043	100	585	0	585
DA847720	65008341	65008917	100	576	0	576
DA936518	65007458	65008044	100	586	0	586
DA943036	65007458	65008054	100	596	0	596
DB019609	65007458	65008130	99.5	669	0	666
DB027553	65007458	65008055	99.9	596	1	595
DB028976	65007502	65008052	100	550	0	550
DB029145	65007458	65008058	99.5	600	0	599
DB030746	65007458	65008046	100	588	0	588
DB030952	65007932	65008481	98.8	546	2	542
DB031327	65007458	65008067	99.9	608	1	607
DB033795	65007458	65008049	100	591	0	591
DB034804	65007588	65008168	100	580	0	580
DB037666	65007459	65008041	99.9	581	1	580
DB044202	65007564	65008114	99.9	549	1	548
DB167291	65007463	65008045	100	582	0	582
DB168716	65007458	65008061	100	603	0	603
DB171109	65007458	65008044	100	586	0	586
DB171885	65007458	65008051	99.9	592	1	591
DB172652	65007458	65008052	99.7	592	2	590
DB247214	65007458	65008138	98.3	674	1	665
DB249257	65007916	65008412	100	496	0	496
DB251872	65007458	65008088	100	630	0	630
DB263242	65007458	65008058	99.9	598	1	597
DN991280	65007474	65008045	100	571	0	571
HY008431	65007564	65008102	100	537	0	537
HY011039	65007918	65008434	99.9	515	1	514
HY130191	65008258	65008738	100	479	0	479
HY335166	65008580	65009064	99.6	482	2	480

TSS

TSS No.	TSS Name	TSS expression level (Expr) in TPM range:
		no expression	0 < Expr ≤ 1	1 < Expr ≤ 5	5 < Expr ≤ 10	Expr > 10
TSS #1	TSS_39560	1733 libraries	87 libraries	6 libraries	2 libraries	1 library
TSS #2	TSS_39561	1815 libraries	11 libraries	2 libraries	1 library	0 libraries
TSS #3	TSS_39562	1813 libraries	12 libraries	2 libraries	1 library	1 library
TSS #4	TSS_39563	230 libraries	225 libraries	450 libraries	259 libraries	665 libraries

The graphical summary, for retro_hsap_68 TSS expression levels > 0 TPM .
TSS expression levels were studied across 1829 TSS-CAGE libraries, based on FANTOM5 data.
The expression values were visualized using beanplot. If you have any doubts, how to read it, read more in Kampstra P (2008)

Lab

retro_hsap_68 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_hsap_68 has 4 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Gorilla gorilla	retro_ggor_1053
Pongo abelii	retro_pabe_183
Bos taurus	retro_btau_354
Canis familiaris	retro_cfam_140

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Parental genes homology:

Parental genes homology involve 29 parental genes, and 76 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000004884	2 retrocopies	retro_acar_21, retro_acar_6,
Ailuropoda melanoleuca	ENSAMEG00000008425	1 retrocopy	retro_amel_126,
Anas platyrhynchos	ENSAPLG00000010667	1 retrocopy	retro_apla_6,
Bos taurus	ENSBTAG00000013162	1 retrocopy	retro_btau_354,
Canis familiaris	ENSCAFG00000011666	3 retrocopies	retro_cfam_140, retro_cfam_191, retro_cfam_509,
Ciona intestinalis	ENSCING00000009665	1 retrocopy	retro_cint_12,
Cavia porcellus	ENSCPOG00000004169	3 retrocopies	retro_cpor_1072, retro_cpor_619, retro_cpor_938,
Ciona savignyi	ENSCSAVG00000008588	1 retrocopy	retro_csav_3,
Dipodomys ordii	ENSDORG00000015467	1 retrocopy	retro_dord_16,
Echinops telfairi	ENSETEG00000010996	1 retrocopy	retro_etel_43,
Ficedula albicollis	ENSFALG00000005812	1 retrocopy	retro_falb_18,
Felis catus	ENSFCAG00000001132	6 retrocopies	retro_fcat_132, retro_fcat_1331, retro_fcat_1571, retro_fcat_1775, retro_fcat_556, retro_fcat_79,
Homo sapiens	ENSG00000044574	1 retrocopy	retro_hsap_3005,
Homo sapiens	ENSG00000109971	8 retrocopies	retro_hsap_2384, retro_hsap_2710, retro_hsap_2758, retro_hsap_340, retro_hsap_3698, retro_hsap_4892, retro_hsap_4896, retro_hsap_68 ,
Homo sapiens	ENSG00000113013	1 retrocopy	retro_hsap_2214,
Gallus gallus	ENSGALG00000006512	1 retrocopy	retro_ggal_8,
Loxodonta africana	ENSLAFG00000030312	4 retrocopies	retro_lafr_1218, retro_lafr_391, retro_lafr_790, retro_lafr_797,
Meleagris gallopavo	ENSMGAG00000001929	1 retrocopy	retro_mgal_9,
Myotis lucifugus	ENSMLUG00000004834	3 retrocopies	retro_mluc_1800, retro_mluc_2300, retro_mluc_777,
Macaca mulatta	ENSMMUG00000004696	7 retrocopies	retro_mmul_1536, retro_mmul_2188, retro_mmul_2628, retro_mmul_2632, retro_mmul_580, retro_mmul_778, retro_mmul_963,
Monodelphis domestica	ENSMODG00000012958	2 retrocopies	retro_mdom_127, retro_mdom_99,
Mustela putorius furo	ENSMPUG00000005810	9 retrocopies	retro_mputfur_1048, retro_mputfur_1056, retro_mputfur_1144, retro_mputfur_131, retro_mputfur_188, retro_mputfur_309, retro_mputfur_627, retro_mputfur_694, retro_mputfur_958,
Oreochromis niloticus	ENSONIG00000004759	1 retrocopy	retro_onil_2,
Pelodiscus sinensis	ENSPSIG00000012450	2 retrocopies	retro_psin_17, retro_psin_5,
Pan troglodytes	ENSPTRG00000004404	5 retrocopies	retro_ptro_1743, retro_ptro_2507, retro_ptro_272, retro_ptro_3259, retro_ptro_3264,
Taeniopygia guttata	ENSTGUG00000000491	1 retrocopy	retro_tgut_7,
Takifugu rubripes	ENSTRUG00000005265	1 retrocopy	retro_trub_30,
Tursiops truncatus	ENSTTRG00000011139	6 retrocopies	retro_ttru_1507, retro_ttru_1650, retro_ttru_1696, retro_ttru_35, retro_ttru_741, retro_ttru_808,
Xiphophorus maculatus	ENSXMAG00000001602	1 retrocopy	retro_xmac_20,

Population studies

Expression level across human populations :

Library	Retrogene expression
CEU_NA11831	2.03 RPM
CEU_NA11843	0.82 RPM
CEU_NA11930	0.95 RPM
CEU_NA12004	0.95 RPM
CEU_NA12400	2.21 RPM
CEU_NA12751	0.68 RPM
CEU_NA12760	1.75 RPM
CEU_NA12827	2.36 RPM
CEU_NA12872	1.33 RPM
CEU_NA12873	1.63 RPM
FIN_HG00183	0.69 RPM
FIN_HG00277	2.18 RPM
FIN_HG00315	1.35 RPM
FIN_HG00321	2.87 RPM
FIN_HG00328	2.77 RPM
FIN_HG00338	1.41 RPM
FIN_HG00349	1.31 RPM
FIN_HG00375	1.00 RPM
FIN_HG00377	0.86 RPM
FIN_HG00378	1.55 RPM
GBR_HG00099	1.05 RPM
GBR_HG00111	0.82 RPM
GBR_HG00114	1.66 RPM
GBR_HG00119	1.32 RPM
GBR_HG00131	1.58 RPM
GBR_HG00133	0.53 RPM
GBR_HG00134	0.98 RPM
GBR_HG00137	1.02 RPM
GBR_HG00142	0.67 RPM
GBR_HG00143	1.60 RPM
TSI_NA20512	1.38 RPM
TSI_NA20513	1.89 RPM
TSI_NA20518	2.05 RPM
TSI_NA20532	1.50 RPM
TSI_NA20538	2.63 RPM
TSI_NA20756	2.01 RPM
TSI_NA20765	3.36 RPM
TSI_NA20771	1.05 RPM
TSI_NA20786	1.73 RPM
TSI_NA20798	2.74 RPM
YRI_NA18870	1.79 RPM
YRI_NA18907	1.94 RPM
YRI_NA18916	1.37 RPM
YRI_NA19093	1.85 RPM
YRI_NA19099	2.40 RPM
YRI_NA19114	2.49 RPM
YRI_NA19118	1.70 RPM
YRI_NA19213	2.15 RPM
YRI_NA19214	2.29 RPM
YRI_NA19223	1.41 RPM

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Indel association:

No indels were associated with its genomic coordinates. Based on Kabza et al. 2015 (PubMed).