Parental gene:

HSPA8, ENSPTRG00000004404

Aliases:None
Description:heat shock 70kDa protein 8 [Source:HGNC Symbol;Acc:5241]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:11:121025508..121029079(-)


>ENSPTRG00000004404
ATGCCAAGGGACGCAGTTGGTATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTTTTCCAGCACGGAAAAGTCGAGAT
AATTGCCAATGATCAGGGAAACCGAACCACTCCAAGCTACGTCGCCTTTACGGACACTGAACGGTTGATCGGTGATGCCG
CAAAGAATCAAGTTGCAATGAACCCCACCAACACAGTTTTTGATGCCAAACGTCTGATTGGACGCAGATTTGATGATGCT
GTTGTCCAGTCTGATATGAAACATTGGCCGTTCATGGTGGTGAATGATGCTGGCAGGCCCAAGGTCCAAGTAGAATACAA
GGGAGAGACCAAAAGCTTCTATCCAGAGGAGGTGTCCTCTATGGTTCTGACAAAAATGAAGGAAATTGCAGAAGCCTACC
TTGGCACTGTTACCAATGCTGTGGTCACAGTGCCAGCTTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTGGA
ACTATTGCTGGTCTCAATGTACTTAGAATTATTAATGAGCCAACTGCTGCTGCTATTGCTTACGGCTTAGACTGGCAGGT
TGGAGCAGAAAGAAACGTGCTCATCTTTGACCTGGGAGGTGGCACTTTTGATGTGTCAATCCTCACTATTGAGGATGGAA
TCTTTGAGGTCAAGTCTACAGCTGGAGACACCCACTTGGGTGGAGAAGATTTTGACAACCGAATGGTCAACCATTTTATT
GCTGAGTTTAAGCGCAAGCATAAGAAGGACATCAGTGAGAACAAGAGAGCTGTAAGACGCCTCCGTACAGCTTGTGAACG
TGCTAAGCGTACCCTCTCTTCCAGCACCCAGGCCAGTATTGAGATCGATTCTCTCTATGAGGGAATCGACTTCTATACCT
CCATTACCCGTGCCCGATTTGAAGAATTGAATGCTGACCTGTTCCGTGGCACCCTGGACCCAGTAGAGAAAGCCCTTCGA
GATGCCAAACTAGACAAGTCACAGATTCATGATATTGTCCTGGTTGGTGGTTCTACTCGTATCCCCAAGATTCAGAAGCT
TCTCCAAGACTTCTTCAATGGAAAAGAACTGAATAAGAGCATCAACCCTGATGAAGCTGTTGCTTATGGGGCTGCTGTCC
AGGCAGCCATCTTGTCTGGAGACAAGTCTGAGAATGTTCAAGATTTGCTGCTCTTGGATGTCACTCCTCTTTCCCTTGGT
ATTGAAACTGCTGGTGGAGTCATGACCGTCCTCATCAAGCGTAATACCACCATTCCTACCAAGCAGACACAGACCTTCAC
TACCTATTCTGACAACCAGCCTGGTGTGCTTATTCAGGTATATGAAGGCGAGCGTGCCATGACAAAGGATAACAACCTGC
TTGGCAAGTTTGAACTCACGGGCATACCTCCTGCACCCCGAGGTGTTCCTCAGATTGAAGTCACTTTTGACATTGATGCC
AATGGTATCCTCAATGTCTCTGCTGTGGACAAGAGTACGGGAAAAGAGAACAAGATTACTATCACTAATGACAAGGGCCG
TTTGAGCAAGGAAGACATTGAACGTATGGTCCAGGAAGCTGAGAAGTACAAAGCTGAAGATGAGAAGCAGAGGGACAAGG
TGTCATCCAAGAATTCACTTGAGTCCTATGCCTTTAACATGAAAGCAACTGTTGAAGATGAGAAACTTCAAGGCAAGATT
AACGATGAGGACAAACAGAAGATTCTGGACAAGTGTAATGAAATTATCAACTGGCTTGATAAGAATCAGACTGCCGAGAA
GGAAGAATTTGAACATCAACAGAAAGAGCTGGAGAAAGTTTGCAACCCCATCATCACCAAGCTGTACAGGAGGCATGGAA
TGCCTGGGGGATTTCCTGGTGGTGGAGCTTCCCTCTGGTGGTGCTTCTCAGGGCCCACCATTGAAGAGGTTGATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 845 .51 RPM
SRP007412_cerebellum 738 .30 RPM
SRP007412_heart 709 .86 RPM
SRP007412_kidney 971 .90 RPM
SRP007412_liver 502 .96 RPM
SRP007412_testis 445 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004884 ortholog_one2one 2 retrogenes
retro_acar_21, retro_acar_6,
Ailuropoda melanoleuca ENSAMEG00000008425 ortholog_one2one 1 retrogene
retro_amel_126,
Anas platyrhynchos ENSAPLG00000010667 ortholog_one2one 1 retrogene
retro_apla_6,
Bos taurus ENSBTAG00000013162 ortholog_one2one 1 retrogene
retro_btau_354,
Canis familiaris ENSCAFG00000011666 possible_ortholog 3 retrogenes
retro_cfam_140, retro_cfam_191, retro_cfam_509,
Ciona intestinalis ENSCING00000009665 ortholog_one2many 1 retrogene
retro_cint_12,
Cavia porcellus ENSCPOG00000004169 ortholog_one2one 3 retrogenes
retro_cpor_1072, retro_cpor_619, retro_cpor_938,
Ciona savignyi ENSCSAVG00000008588 ortholog_many2many 1 retrogene
retro_csav_3,
Dipodomys ordii ENSDORG00000015467 ortholog_one2one 1 retrogene
retro_dord_16,
Echinops telfairi ENSETEG00000010996 ortholog_one2one 1 retrogene
retro_etel_43,
Ficedula albicollis ENSFALG00000005812 ortholog_one2one 1 retrogene
retro_falb_18,
Felis catus ENSFCAG00000001132 ortholog_one2one 6 retrogenes
retro_fcat_132, retro_fcat_1331, retro_fcat_1571, retro_fcat_1775, retro_fcat_556, retro_fcat_79,
Homo sapiens ENSG00000109971 ortholog_one2one 8 retrogenes
retro_hsap_2384, retro_hsap_2710, retro_hsap_2758, retro_hsap_340, retro_hsap_3698, retro_hsap_4892, retro_hsap_4896, retro_hsap_68,
Gallus gallus ENSGALG00000006512 ortholog_one2one 1 retrogene
retro_ggal_8,
Loxodonta africana ENSLAFG00000030312 ortholog_one2one 4 retrogenes
retro_lafr_1218, retro_lafr_391, retro_lafr_790, retro_lafr_797,
Meleagris gallopavo ENSMGAG00000001929 ortholog_one2one 1 retrogene
retro_mgal_9,
Myotis lucifugus ENSMLUG00000004834 ortholog_one2one 3 retrogenes
retro_mluc_1800, retro_mluc_2300, retro_mluc_777,
Macaca mulatta ENSMMUG00000004696 ortholog_one2one 7 retrogenes
retro_mmul_1536, retro_mmul_2188, retro_mmul_2628, retro_mmul_2632, retro_mmul_580, retro_mmul_778, retro_mmul_963,
Monodelphis domestica ENSMODG00000012958 ortholog_one2many 2 retrogenes
retro_mdom_127, retro_mdom_99,
Mustela putorius furo ENSMPUG00000005810 possible_ortholog 9 retrogenes
retro_mputfur_1048, retro_mputfur_1056, retro_mputfur_1144, retro_mputfur_131, retro_mputfur_188, retro_mputfur_309, retro_mputfur_627, retro_mputfur_694, retro_mputfur_958,
Oreochromis niloticus ENSONIG00000004759 ortholog_one2many 1 retrogene
retro_onil_2,
Pelodiscus sinensis ENSPSIG00000012450 ortholog_one2one 2 retrogenes
retro_psin_17, retro_psin_5,
Pan troglodytes ENSPTRG00000000563 within_species_paralog 1 retrogene
retro_ptro_2033,
Pan troglodytes ENSPTRG00000017290 within_species_paralog 1 retrogene
retro_ptro_1680,
Taeniopygia guttata ENSTGUG00000000491 ortholog_one2one 1 retrogene
retro_tgut_7,
Takifugu rubripes ENSTRUG00000005265 ortholog_one2one 1 retrogene
retro_trub_30,
Tursiops truncatus ENSTTRG00000011139 ortholog_one2one 6 retrogenes
retro_ttru_1507, retro_ttru_1650, retro_ttru_1696, retro_ttru_35, retro_ttru_741, retro_ttru_808,
Xiphophorus maculatus ENSXMAG00000001602 ortholog_one2many 1 retrogene
retro_xmac_20,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_272 87.41 68.03
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2. retro_ptro_1743 72.06 73.35
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3. retro_ptro_2507 87.77 57.37
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4. retro_ptro_3259 83.37 64.89
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5. retro_ptro_3264 85.00 96.71
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Download FASTA sequences of all ENSPTRG00000004404 retrocopies