RetrogeneDB - Parental gene ENSMODG00000012958 details

							
>ENSMODG00000012958
ATGTCGAAGGGACCCGCAGTTGGCATTGATCTTGGCACCACTTACTCCTGTGTAGGAGTCTTCCAACATGGGAAAGTGGA

GATCATTGCTAATGACCAAGGAAACAGGACCACCCCCAGCTACGTCGCCTTCACCGATACAGAACGTTTAATCGGTGATG

CTGCAAAGAATCAAGTTGCAATGAACCCCACCAACACAGTCTTTGATGCCAAACGTCTGATTGGTCGCAGATTTGATGAT

GCAGTTGTACAGTCAGACATGAAGCATTGGCCTTTTACGGTGGTGAATGACGCAGGCAGGCCTAAGGTCCAAGTGGAGTA

CAAAGGGGAGACCAAAAGTTTCTATCCAGAAGAAGTATCATCTATGGTCTTGACCAAGATGAAAGAAATTGCTGAAGCTT

ATCTTGGGAAGACTGTCACAAATGCTGTTGTCACAGTACCAGCCTACTTCAACGATTCCCAACGACAGGCTACCAAAGAC

GCCGGAACCATTGCTGGTCTCAATGTGCTCCGAATCATCAATGAGCCAACTGCTGCTGCTATTGCTTATGGCTTGGACAA

AAAAGTTGGTGCCGAGAGAAATGTGTTGATCTTTGACCTTGGAGGTGGTACCTTTGATGTCTCCATCCTTACCATTGAAG

ATGGTATCTTTGAAGTCAAGTCCACAGCTGGGGACACCCACTTGGGTGGTGAGGACTTTGACAACCGCATGGTCAACCAT

TTCATTGCTGAGTTCAAGCGAAAGCACAAGAAGGACATCAGTGAGAACAAGAGGGCTGTCCGCCGTCTGCGCACTGCTTG

TGAACGTGCAAAGAGAACCCTCTCTTCCAGTACACAGGCTAGTATTGAGATCGATTCCCTCTATGAAGGTATCGACTTCT

ATACCTCTATTACCCGGGCCCGTTTTGAAGAGCTGAATGCTGACCTCTTCCGTGGCACACTGGACCCCGTGGAAAAGGCC

CTCAGAGATGCCAAGCTAGACAAATCACAGATTCATGACATCGTCTTGGTGGGTGGTTCTACTCGAATCCCCAAAATCCA

GAAGCTTCTGCAGGACTTCTTCAATGGCAAGGAGCTCAACAAGAGTATCAATCCTGATGAGGCTGTTGCCTATGGTGCAG

CTGTCCAGGCTGCCATCTTGTCTGGAGATAAATCTGAGAATGTGCAGGACTTGCTGCTGCTAGATGTCACTCCTCTTTCC

CTTGGAATTGAAACTGCTGGAGGAGTCATGACAGTTCTGATCAAACGCAATACCACCATTCCCACAAAACAGACTCAGAC

CTTTACTACCTACTCTGACAATCAGCCTGGTGTGCTTATTCAGGTTTATGAAGGTGAGAGAGCAATGACAAAGGATAACA

ACTTACTTGGCAAGTTTGAGCTCACAGGAATCCCTCCTGCCCCAAGGGGTGTCCCTCAGATTGAAGTTACATTTGACATT

GATGCTAATGGCATCCTCAATGTGTCTGCTGTGGATAAGAGCACAGGCAAGGAGAACAAGATCACCATCACCAATGACAA

AGGTCGTCTGAGCAAAGAAGACATTGAGCGCATGGTCCAGGAGGCTGAAAAGTACAAGGCTGAAGATGAGAAGCAGAGAG

ATAAGGTGTCTTCCAAGAATTCTCTTGAGTCTTACGCTTTCAACATGAAGGCAACTGTTGAGGATGAGAAACTGCAAGGC

AAGATTGGTGATGAAGACAAACAGAAGATCCTTGACAAATGCAATGAAATAATCAACTGGCTGGATAAGAACCAGACTGC

TGAAAAGGAAGAATTTGAGCATCAGCAGAAAGAATTGGAAAAAGTCTGCAACCCCATCATCACCAAGCTGTACCAGAGTG

CAGGAGGCATGCCGGGAGGCATGCCTGGTGGGTTCCCAGGAGGTGGAGCAGCCCCATCTGGAGGTGCCTCTTCTGGACCT

ACCATTGAAGAGGTCGACTAA

Library	Parental gene expression (RPM)
SRP007412_brain	0 .00 RPM
SRP007412_cerebellum	0 .00 RPM
SRP007412_heart	0 .00 RPM
SRP007412_kidney	0 .00 RPM
SRP007412_liver	0 .00 RPM
SRP007412_testis	0 .00 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000004884	ortholog_one2many	2 retrogenes	retro_acar_21, retro_acar_6,
Ailuropoda melanoleuca	ENSAMEG00000008425	ortholog_one2many	1 retrogene	retro_amel_126,
Anas platyrhynchos	ENSAPLG00000010667	ortholog_one2many	1 retrogene	retro_apla_6,
Bos taurus	ENSBTAG00000013162	ortholog_one2many	1 retrogene	retro_btau_354,
Canis familiaris	ENSCAFG00000011666	ortholog_many2many	3 retrogenes	retro_cfam_140, retro_cfam_191, retro_cfam_509,
Ciona intestinalis	ENSCING00000009665	ortholog_one2many	1 retrogene	retro_cint_12,
Callithrix jacchus	ENSCJAG00000007648	ortholog_one2many	5 retrogenes	retro_cjac_2388, retro_cjac_3306, retro_cjac_3898, retro_cjac_4057, retro_cjac_721,
Cavia porcellus	ENSCPOG00000004169	ortholog_many2many	3 retrogenes	retro_cpor_1072, retro_cpor_619, retro_cpor_938,
Ciona savignyi	ENSCSAVG00000008588	ortholog_many2many	1 retrogene	retro_csav_3,
Dipodomys ordii	ENSDORG00000015467	ortholog_one2many	1 retrogene	retro_dord_16,
Equus caballus	ENSECAG00000013510	ortholog_one2many	2 retrogenes	retro_ecab_291, retro_ecab_628,
Echinops telfairi	ENSETEG00000010996	ortholog_one2many	1 retrogene	retro_etel_43,
Ficedula albicollis	ENSFALG00000005812	ortholog_one2many	1 retrogene	retro_falb_18,
Felis catus	ENSFCAG00000001132	ortholog_one2many	6 retrogenes	retro_fcat_132, retro_fcat_1331, retro_fcat_1571, retro_fcat_1775, retro_fcat_556, retro_fcat_79,
Homo sapiens	ENSG00000109971	ortholog_one2many	8 retrogenes	retro_hsap_2384, retro_hsap_2710, retro_hsap_2758, retro_hsap_340, retro_hsap_3698, retro_hsap_4892, retro_hsap_4896, retro_hsap_68,
Gallus gallus	ENSGALG00000006512	ortholog_one2many	1 retrogene	retro_ggal_8,
Gorilla gorilla	ENSGGOG00000008381	ortholog_one2many	8 retrogenes	retro_ggor_1053, retro_ggor_1810, retro_ggor_1888, retro_ggor_1918, retro_ggor_2501, retro_ggor_3054, retro_ggor_3057, retro_ggor_360,
Loxodonta africana	ENSLAFG00000030312	ortholog_one2many	4 retrogenes	retro_lafr_1218, retro_lafr_391, retro_lafr_790, retro_lafr_797,
Meleagris gallopavo	ENSMGAG00000001929	ortholog_one2many	1 retrogene	retro_mgal_9,
Myotis lucifugus	ENSMLUG00000004834	ortholog_many2many	3 retrogenes	retro_mluc_1800, retro_mluc_2300, retro_mluc_777,
Macaca mulatta	ENSMMUG00000004696	ortholog_one2many	7 retrogenes	retro_mmul_1536, retro_mmul_2188, retro_mmul_2628, retro_mmul_2632, retro_mmul_580, retro_mmul_778, retro_mmul_963,
Mustela putorius furo	ENSMPUG00000005810	ortholog_many2many	9 retrogenes	retro_mputfur_1048, retro_mputfur_1056, retro_mputfur_1144, retro_mputfur_131, retro_mputfur_188, retro_mputfur_309, retro_mputfur_627, retro_mputfur_694, retro_mputfur_958,
Mus musculus	ENSMUSG00000015656	ortholog_one2many	8 retrogenes	retro_mmus_2244, retro_mmus_2584, retro_mmus_26, retro_mmus_2621, retro_mmus_2840, retro_mmus_316, retro_mmus_351, retro_mmus_620,
Nomascus leucogenys	ENSNLEG00000007419	ortholog_one2many	8 retrogenes	retro_nleu_119, retro_nleu_1258, retro_nleu_1261, retro_nleu_1582, retro_nleu_175, retro_nleu_1781, retro_nleu_370, retro_nleu_64,
Oryctolagus cuniculus	ENSOCUG00000015533	ortholog_one2many	4 retrogenes	retro_ocun_1308, retro_ocun_53, retro_ocun_584, retro_ocun_753,
Oreochromis niloticus	ENSONIG00000004759	ortholog_many2many	1 retrogene	retro_onil_2,
Pongo abelii	ENSPPYG00000003987	ortholog_one2many	9 retrogenes	retro_pabe_183, retro_pabe_2193, retro_pabe_2254, retro_pabe_2260, retro_pabe_2261, retro_pabe_3153, retro_pabe_355, retro_pabe_3804, retro_pabe_3808,
Pelodiscus sinensis	ENSPSIG00000012450	ortholog_one2many	2 retrogenes	retro_psin_17, retro_psin_5,
Pan troglodytes	ENSPTRG00000004404	ortholog_one2many	5 retrogenes	retro_ptro_1743, retro_ptro_2507, retro_ptro_272, retro_ptro_3259, retro_ptro_3264,
Ictidomys tridecemlineatus	ENSSTOG00000003756	ortholog_one2many	1 retrogene	retro_itri_51,
Taeniopygia guttata	ENSTGUG00000000491	ortholog_one2many	1 retrogene	retro_tgut_7,
Takifugu rubripes	ENSTRUG00000005265	ortholog_one2many	1 retrogene	retro_trub_30,
Tursiops truncatus	ENSTTRG00000011139	ortholog_one2many	6 retrogenes	retro_ttru_1507, retro_ttru_1650, retro_ttru_1696, retro_ttru_35, retro_ttru_741, retro_ttru_808,
Xiphophorus maculatus	ENSXMAG00000001602	ortholog_many2many	1 retrogene	retro_xmac_20,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_mdom_99	86.49	97.06	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_mdom_127	99.85	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSMODG00000012958 retrocopies

Parental gene:	ENSMODG00000012958
Aliases:	None
Description:	None
Organism:	*Opossum (Monodelphis domestica)*
Coordinates:	4:225031984..225036330(+)

Parental gene:

ENSMODG00000012958