Parental gene:

MMU.5357, ENSMMUG00000004696

Aliases:None
Description:heat shock cognate 71 kDa protein [Source:RefSeq peptide;Acc:NP_001248586]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:14:121410926..121415566(-)


>ENSMMUG00000004696
ATGTCCAAGGGACCTGCAGTTGGTATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTTTTCCAGCACGGAAAAGTAGA
GATAATTGCCAATGATCAGGGAAACCGAACCACTCCAAGCTATGTTGCCTTTACGGACACTGAACGGTTGATCGGTGACG
CTGCAAAGAATCAAGTTGCAATGAACCCCACCAACACAGTTTTTGATGCCAAACGTCTGATTGGACGCAGATTTGATGAT
GCTGTTGTCCAGTCTGATATGAAGCATTGGCCCTTCATGGTGGTGAATGATGCTGGCAGGCCCAAGGTCCAAGTAGAATA
TAAGGGAGAGACCAAAAGCTTCTATCCAGAGGAGGTATCCTCTATGGTTCTGACAAAGATGAAGGAAATTGCAGAAGCCT
ATCTTGGGAAGACTGTTACCAATGCTGTGGTCACAGTGCCAGCTTATTTTAATGACTCTCAGCGTCAGGCTACCAAAGAT
GCTGGAACTATTGCTGGTCTCAATGTACTTAGAATTATTAATGAGCCAACTGCTGCTGCTATTGCTTACGGCTTAGACAA
AAAGGTTGGAGCAGAAAGAAACGTGCTTATCTTTGACCTGGGAGGTGGCACTTTCGATGTGTCAATCCTCACTATTGAGG
ATGGAATCTTTGAGGTCAAGTCTACAGCTGGAGACACCCACTTGGGTGGAGAAGATTTTGACAACCGAATGGTTAACCAT
TTTATTGCAGAGTTCAAGCGCAAGCATAAGAAGGACATCAGCGAGAACAAGAGAGCTGTAAGACGCCTTCGTACTGCTTG
TGAACGTGCTAAGCGTACGCTCTCTTCCAGCACCCAGGCCAGTATTGAGATCGATTCTCTCTATGAAGGAATCGACTTCT
ATACCTCCATTACCCGTGCCCGATTTGAAGAATTGAATGCTGACCTGTTCCGTGGCACCCTGGACCCAGTAGAGAAAGCC
CTTCGAGATGCCAAACTAGACAAGTCACAGATTCATGATATTGTCCTGGTTGGTGGTTCTACTCGTATCCCCAAGATTCA
GAAGCTTCTCCAAGATTTCTTCAACGGAAAAGAACTGAATAAGAGCATCAACCCTGATGAAGCTGTTGCTTATGGTGCAG
CTGTCCAGGCAGCCATCCTGTCTGGAGACAAGTCTGAAAATGTTCAAGATTTGTTGCTCTTGGATGTCACTCCTCTTTCC
CTTGGTATTGAAACTGCTGGTGGAGTAATGACCGTCCTTATTAAGCGTAATACCACCATTCCTACCAAGCAGACACAGAC
CTTCACTACCTATTCTGACAACCAGCCTGGTGTGCTTATTCAGGTCTATGAAGGAGAGCGTGCCATGACCAAGGATAACA
ACCTGCTTGGCAAGTTTGAACTCACGGGCATACCTCCTGCACCCCGAGGTGTTCCTCAGATTGAAGTCACTTTTGACATT
GATGCCAATGGTATCCTGAATGTCTCTGCTGTGGACAAGAGTACAGGAAAAGAGAATAAGATTACTATCACTAATGACAA
GGGCCGTTTGAGCAAGGAAGACATTGAACGTATGGTCCAGGAAGCTGAGAAGTACAAAGCTGAAGATGAGAAGCAGAGGG
ACAAGGTATCATCCAAGAATTCACTTGAGTCCTATGCATTCAACATGAAAGCAACTGTCGAAGACGAGAAACTTCAAGGC
AAGATTAACGATGAGGACAAACAGAAGATTCTGGACAAGTGTAATGAAATTATCAACTGGCTTGATAAGAATCAGACTGC
CGAGAAGGAAGAGTTTGAACATCAGCAGAAAGAGCTGGAGAAAGTTTGCAACCCCATCATCACCAAGCTGTACCAGAGTG
CAGGAGGCATGCCAGGAGGAATGCCTGGGGGATTCCCTGGTGGTGGAGCTCCTCCCTCTGGTGGTGCTTCCTCAGGGCCC
ACTATTGAAGAGGTTGATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 1177 .02 RPM
SRP007412_brain 1399 .06 RPM
SRP007412_cerebellum 1090 .15 RPM
SRP007412_heart 748 .79 RPM
SRP007412_kidney 1404 .90 RPM
SRP007412_liver 789 .22 RPM
SRP007412_testis 185 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004884 ortholog_one2one 2 retrogenes
retro_acar_21, retro_acar_6,
Ailuropoda melanoleuca ENSAMEG00000008425 ortholog_one2one 1 retrogene
retro_amel_126,
Anas platyrhynchos ENSAPLG00000010667 ortholog_one2one 1 retrogene
retro_apla_6,
Bos taurus ENSBTAG00000013162 ortholog_one2one 1 retrogene
retro_btau_354,
Canis familiaris ENSCAFG00000011666 possible_ortholog 3 retrogenes
retro_cfam_140, retro_cfam_191, retro_cfam_509,
Ciona intestinalis ENSCING00000009665 ortholog_one2many 1 retrogene
retro_cint_12,
Cavia porcellus ENSCPOG00000004169 ortholog_one2one 3 retrogenes
retro_cpor_1072, retro_cpor_619, retro_cpor_938,
Ciona savignyi ENSCSAVG00000008588 ortholog_many2many 1 retrogene
retro_csav_3,
Dipodomys ordii ENSDORG00000015467 ortholog_one2one 1 retrogene
retro_dord_16,
Echinops telfairi ENSETEG00000010996 ortholog_one2one 1 retrogene
retro_etel_43,
Ficedula albicollis ENSFALG00000005812 ortholog_one2one 1 retrogene
retro_falb_18,
Felis catus ENSFCAG00000001132 ortholog_one2one 6 retrogenes
retro_fcat_132, retro_fcat_1331, retro_fcat_1571, retro_fcat_1775, retro_fcat_556, retro_fcat_79,
Homo sapiens ENSG00000109971 ortholog_one2one 8 retrogenes
retro_hsap_2384, retro_hsap_2710, retro_hsap_2758, retro_hsap_340, retro_hsap_3698, retro_hsap_4892, retro_hsap_4896, retro_hsap_68,
Gallus gallus ENSGALG00000006512 ortholog_one2one 1 retrogene
retro_ggal_8,
Loxodonta africana ENSLAFG00000030312 ortholog_one2one 4 retrogenes
retro_lafr_1218, retro_lafr_391, retro_lafr_790, retro_lafr_797,
Meleagris gallopavo ENSMGAG00000001929 ortholog_one2one 1 retrogene
retro_mgal_9,
Myotis lucifugus ENSMLUG00000004834 ortholog_one2one 3 retrogenes
retro_mluc_1800, retro_mluc_2300, retro_mluc_777,
Monodelphis domestica ENSMODG00000012958 ortholog_one2many 2 retrogenes
retro_mdom_127, retro_mdom_99,
Mustela putorius furo ENSMPUG00000005810 possible_ortholog 9 retrogenes
retro_mputfur_1048, retro_mputfur_1056, retro_mputfur_1144, retro_mputfur_131, retro_mputfur_188, retro_mputfur_309, retro_mputfur_627, retro_mputfur_694, retro_mputfur_958,
Oreochromis niloticus ENSONIG00000004759 ortholog_one2many 1 retrogene
retro_onil_2,
Pelodiscus sinensis ENSPSIG00000012450 ortholog_one2one 2 retrogenes
retro_psin_17, retro_psin_5,
Pan troglodytes ENSPTRG00000004404 ortholog_one2one 5 retrogenes
retro_ptro_1743, retro_ptro_2507, retro_ptro_272, retro_ptro_3259, retro_ptro_3264,
Taeniopygia guttata ENSTGUG00000000491 ortholog_one2one 1 retrogene
retro_tgut_7,
Takifugu rubripes ENSTRUG00000005265 ortholog_one2one 1 retrogene
retro_trub_30,
Tursiops truncatus ENSTTRG00000011139 ortholog_one2one 6 retrogenes
retro_ttru_1507, retro_ttru_1650, retro_ttru_1696, retro_ttru_35, retro_ttru_741, retro_ttru_808,
Xiphophorus maculatus ENSXMAG00000001602 ortholog_one2many 1 retrogene
retro_xmac_20,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_580 84.90 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_mmul_778 86.13 74.46
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_mmul_963 67.34 52.01
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_mmul_1536 88.18 77.09
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_mmul_2188 90.80 76.93
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_mmul_2628 83.33 82.97
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_mmul_2632 86.09 76.47
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSMMUG00000004696 retrocopies