RetrogeneDB ID: | retro_itri_822 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393328.1:9070134..9070554(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC34 | ||
Ensembl ID: | ENSSTOG00000023255 | ||
Aliases: | None | ||
Description: | cell division cycle 34 [Source:HGNC Symbol;Acc:1734] |
Percent Identity: | 82.86 % |
Parental protein coverage: | 79.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI |
.A..KFPIDYPYSPP.FRFLTKMWHPNIYE.GDVC..ILHPPVDDPQSGELPSER.NPTQNVRTILLS.I | |
Retrocopy | KAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCPWILHPPVDDPQSGELPSERRNPTQNVRTILLSGI |
Parental | SLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVDAERDGVKVPTTLAEYCVKTKAPA |
SLL.EPNTFSPANVDASVM.RKW..SKGKD.EY..IIRKQV..TK..AE.DGVKVPTTLAEYC.KTK.P. | |
Retrocopy | SLLSEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVSATKAEAEKDGVKVPTTLAEYCIKTKVPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000023874 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000812 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020307 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001017 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000010153 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008348 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000007968 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023255 | 1 retrocopy |
retro_itri_822 ,
|
Tursiops truncatus | ENSTTRG00000000391 | 2 retrocopies |