RetrogeneDB ID: | retro_rnor_1464 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 19:56733384..56733858(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cdc34 | ||
Ensembl ID: | ENSRNOG00000008348 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2 R1 [Source:RefSeq peptide;Acc:NP_001013121] |
Percent Identity: | 88.12 % |
Parental protein coverage: | 68.09 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTF |
.PYSP.AFRFLTK.WHPNIYE.GDVCISILHP.VDDPQSGELPSERWNPTQNVRTILLSVISL.NEPN.F | |
Retrocopy | HPYSPQAFRFLTKTWHPNIYESGDVCISILHPQVDDPQSGELPSERWNPTQNVRTILLSVISLRNEPNNF |
Parental | SPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVDAERDGVKVPTTLAEYCVKTKAPAPDEGSDLFY |
.PA.VDAS..YRKWKESKGKD.EYTDIIRKQVLGTKVDAERDGVKVPTTLAE.CVKTKA..PDEGSDLF. | |
Retrocopy | LPADVDASETYRKWKESKGKDCEYTDIIRKQVLGTKVDAERDGVKVPTTLAEVCVKTKALVPDEGSDLF* |
Parental | DDYYEDGEVEEADSCFGDEE |
D..YED.EVEEADSCFGDEE | |
Retrocopy | D--YEDSEVEEADSCFGDEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 34 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 23 .31 RPM |
SRP017611_liver | 0 .00 RPM | 15 .73 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000023874 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000812 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020307 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001017 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008348 | 1 retrocopy |
retro_rnor_1464 ,
|
Rattus norvegicus | ENSRNOG00000010041 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000010727 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023255 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000391 | 2 retrocopies |