RetrogeneDB ID: | retro_ttru_1142 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_105447:22836..23223(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC34 | ||
Ensembl ID: | ENSTTRG00000000391 | ||
Aliases: | None | ||
Description: | cell division cycle 34 [Source:HGNC Symbol;Acc:1734] |
Percent Identity: | 58.21 % |
Parental protein coverage: | 73.86 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | SGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDIIRKQVLGTKV |
S.ELPSER.NPTQN......S..SL...P..F.PANVDASV...K..ES.G..DRE..D..R.QVLGTK. | |
Retrocopy | SEELPSERQNPTQNIGPSQ-SITSLSANPTLFPPANVDASVIHTKQEESEGR<DREHADVNRRQVLGTKA |
Parental | DAERDGVKV-PTTLAEYCVKTKAPAPDEGSDLFYDDYYEDA-EAEAEADSCFG-DEDDSGTEES |
DAERDG.KV.PT.LA..C.KT.A..P.....LFY...Y..A.EA.AEA.S..G.DEDDSG.EES | |
Retrocopy | DAERDGGKV<PTALAQCCGKTQARCPTRARILFYQHDYRAA<EAQAEARSWGGDDEDDSGHEES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000023874 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000812 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020307 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001017 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000010153 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008348 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023255 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000391 | 2 retrocopies |
retro_ttru_1142 , retro_ttru_98,
|
Tursiops truncatus | ENSTTRG00000000595 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010587 | 1 retrocopy |