RetrogeneDB ID: | retro_meug_1683 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold529206:2..300(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC34 | ||
Ensembl ID: | ENSMEUG00000000812 | ||
Aliases: | None | ||
Description: | cell division cycle 34 [Source:HGNC Symbol;Acc:1734] |
Percent Identity: | 55. % |
Parental protein coverage: | 55.93 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | PPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPAN |
PP.FRFL.K.W.PNI.E.G...I.ILH.P..DP.SGEL..ER.....N.RT.LLSV...L.EPNTF..A. | |
Retrocopy | PPTFRFLFKIWQPNISENGNMAILILHLPLVDPKSGELFLER*RMS*NMRTLLLSVTLMLKEPNTFLSAK |
Parental | VDASVMYRKWKDSKG-KDREYTDIIRKQVL |
VDA..M.RK..D.KG.K.......IRKQ.L | |
Retrocopy | VDALDMFRK*ADFKG>KEKGFAKNIRKQIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000023874 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000812 | 1 retrocopy |
retro_meug_1683 ,
|
Macropus eugenii | ENSMEUG00000009769 | 3 retrocopies | |
Mus musculus | ENSMUSG00000020307 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001017 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000010153 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008348 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023255 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000391 | 2 retrocopies |