RetrogeneDB ID: | retro_itri_986 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393355.1:4315042..4315642(-) | ||
Located in intron of: | ENSSTOG00000007094 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OCIAD1 | ||
Ensembl ID: | ENSSTOG00000014963 | ||
Aliases: | None | ||
Description: | OCIA domain containing 1 [Source:HGNC Symbol;Acc:16074] |
Percent Identity: | 82.18 % |
Parental protein coverage: | 80.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | RSVPLAATSMLITQGLISKGILSSHPKYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSP-LGEAL |
R...LAATSMLITQGLISKGILSSHPKYGSIPKLIFACIM.Y..GKLS...TCQEKFKNLE.SP.LGE.L | |
Retrocopy | RCCALAATSMLITQGLISKGILSSHPKYGSIPKLIFACIMTYSGGKLSFMETCQEKFKNLEISP>LGEDL |
Parental | RSGQARRSLPPGHYSQKSKYDSNVSDQSSFVTSPAADNIEKEMQPRYEPIPFSASMNESTPTGITDHIAQ |
RS.Q..RSLPPGHYSQKSKYDSN.S.QSSFVTS.AADNIEKEM.P.YE.IP.SASMNESTPTGITD.IA. | |
Retrocopy | RSEQTQRSLPPGHYSQKSKYDSNMSGQSSFVTSLAADNIEKEMLPHYESIPCSASMNESTPTGITDYIAL |
Parental | GPDPYLEESPK-RKNITYEELRNKNRESYEVTLTQKTD-PSVRPMQERVPKKEVKVNKYGDT |
GPD..LEE.P.....ITYEEL.NKNRESYEVTL.QKT..PSVRPMQERVPKKEVKVNKYGDT | |
Retrocopy | GPDLNLEENPQXXXXITYEELGNKNRESYEVTLMQKTA<PSVRPMQERVPKKEVKVNKYGDT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000011863 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005961 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000014002 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010655 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000020640 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000018132 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014963 | 1 retrocopy |
retro_itri_986 ,
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