RetrogeneDB ID: | retro_cpor_928 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_35:20547552..20548286(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OCIAD1 | ||
Ensembl ID: | ENSCPOG00000011863 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.38 % |
Parental protein coverage: | 99.6 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | NGRADFREPNAEVPRPIPLIGADYIPTEEERRMFAECNDESFWFRSVPLAATSMLITQGLISKGILSSHP |
NGRADF.EPNAEV.RPIPL.GADYIPTEE.RR.FAE..DESFWFRS.PLAA.SMLIT.GLISKGI.SSHP | |
Retrocopy | NGRADF*EPNAEVSRPIPLTGADYIPTEEDRRTFAEHKDESFWFRSEPLAASSMLITHGLISKGIFSSHP |
Parental | RFGSIPKLIFACIMGYFAGKLSYVRTCQEKFKNLENSPLGEALRSG-QARRSSPSGHYSQKSKYDSNVSG |
RFGSIP.L.FACIMGYFAGKLSY..TCQ.KFKNL.NSPL..AL.SG..A..SSP.G.YSQKSKY.SNVSG | |
Retrocopy | RFGSIPILTFACIMGYFAGKLSYMKTCQVKFKNLKNSPLRQAL*SG<TA*QSSPLGPYSQKSKYASNVSG |
Parental | QSSFVTSPAADNIEKEMLPHYEPIPFSASVNESAPTGISDHIAQGPDPNLEESPKRKNITYEELRQKNRE |
QSSFV.SPAADNI.KE.LPHYEPIPF.AS.NES.PTG.SDH.AQGPDPNLEESPKRK.IT.EELRQKNRE | |
Retrocopy | QSSFVPSPAADNIQKETLPHYEPIPFTASMNESTPTGVSDHTAQGPDPNLEESPKRKHITHEELRQKNRE |
Parental | SYEVTLTQKTGPSVRPMQETVPKKEVKVNKYGDTWDE |
SYEVT.TQKTGPSV..MQE.V....V.VNKYGDTWDE | |
Retrocopy | SYEVTFTQKTGPSVQSMQERV-XXXVTVNKYGDTWDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 231 .22 RPM |
SRP017611_kidney | 0 .00 RPM | 62 .71 RPM |
SRP017611_liver | 0 .00 RPM | 62 .64 RPM |
SRP040447_lung | 0 .00 RPM | 29 .76 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 23 .46 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000011863 | 1 retrocopy |
retro_cpor_928 ,
|
Echinops telfairi | ENSETEG00000005961 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000014002 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010655 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000020640 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000018132 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014963 | 1 retrocopy |