RetrogeneDB ID: | retro_mdom_1737 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 7:135100429..135100801(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000017312 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.14 % |
Parental protein coverage: | 89.29 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | HHDNPVFEMEFL-PAGKVESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH |
H..NP.FE.EFL...GK..SKDDH.HLN.FI.H.ALDLVDEN..LSNN..LK.V.KF.E.FVSAF.TAGH | |
Retrocopy | HCGNPIFETEFL>SDGKTKSKDDHCHLNYFISHLALDLVDENK*LSNNTNLKMVNKFEESFVSAFATAGH |
Parental | MRFIMLHDVRQEDGIKN-FFSDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKK |
..F......RQEDGIK..FFSD.YDLY.KFA.N..Y.PNSPI.S.AFDR.VQFL..K | |
Retrocopy | *DF-*IYNTRQEDGIKS<FFSDIYDLYMKFAINLLYKPNSPI*SNAFDRNVQFLAWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000001719 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000011754 | 2 retrocopies | |
Homo sapiens | ENSG00000196459 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000004690 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022619 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017312 | 2 retrocopies |
retro_mdom_1737 , retro_mdom_1901,
|
Mus musculus | ENSMUSG00000079317 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000002870 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000021674 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006353 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000025097 | 1 retrocopy |