RetrogeneDB ID: retro_ogar_369

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873520.1:9485956..9486355(-)
• Located in intron of: ENSOGAG00000002523

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000002870
• Aliases: None
• Description: None

Sequence

>retro_ogar_369
AGCCACAAATTGAAGACAATGTCTGGAAGCTTCTACTTGGTAATTGTTGGCCACCATGATAATACAGTTTTTGAAATGGT
GTTTTTTGCCAGCTGGGAAAACAGAATCCAAAGACAACCACCGTCATCTAAACCAGCTCATATCTCATGCTGCTCGCCAC
CTGGTGGATGAGAACACGTGGCTGTCTAACATGGACTTAAAGACTGTGCACAAGTTCGAGTGGTTTGTGTCGACATTTGT
CACTGTAGGGCATGTGAGATTTATTATGCTTCATGACATAAGGCAAGAAGATGGAATAAAGAACTTTACTGATGTCTATG
ATTTATATATAAAGTTTGCAGTGAATCTATTTATGAACCCAATTCTCCTATTCAATCAAGCGCATTTGACAGAAAAGTT

Alignment

ORF - retro_ogar_369 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.88 %
• Parental protein coverage: 92.47 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SHILKTMSGSFYFVIVGHHDNPVFEME-FLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKT
          SH.LKTMSGSFY.VIVGHHDN.VFEM..FLPAGK.ESKD.HRHLNQ.I.HAA..LVDEN.WLS.NM.LKT
Retrocopy SHKLKTMSGSFYLVIVGHHDNTVFEMV>FLPAGKTESKDNHRHLNQLISHAARHLVDENTWLS-NMDLKT

Parental  VDKFNEWFVSAFVTAGHI-FIMLHDIRQEDGIKNFFTDVYDLYIKFAMNPF-YEPNSPIRSSAFDRKV
          V.KF.EWFVS.FVT.GH..FIMLHDIRQEDGIKN.FTDVYDLYIKFA.N.F.YEPNSPI.SSAFDRKV
Retrocopy VHKF-EWFVSTFVTVGHVRFIMLHDIRQEDGIKN-FTDVYDLYIKFAVNLF<YEPNSPIQSSAFDRKV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_369 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 11 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000001719	1 retrocopy	retro_acar_53,
Canis familiaris	ENSCAFG00000011754	2 retrocopies	retro_cfam_1608, retro_cfam_368,
Homo sapiens	ENSG00000196459	1 retrocopy	retro_hsap_73,
Microcebus murinus	ENSMICG00000004690	1 retrocopy	retro_mmur_1022,
Macaca mulatta	ENSMMUG00000022619	1 retrocopy	retro_mmul_326,
Monodelphis domestica	ENSMODG00000017312	2 retrocopies	retro_mdom_1737, retro_mdom_1901,
Mus musculus	ENSMUSG00000079317	2 retrocopies	retro_mmus_198, retro_mmus_2522,
Otolemur garnettii	ENSOGAG00000002870	2 retrocopies	retro_ogar_369 , retro_ogar_60,
Pan troglodytes	ENSPTRG00000021674	1 retrocopy	retro_ptro_72,
Sorex araneus	ENSSARG00000006353	1 retrocopy	retro_sara_244,
Ictidomys tridecemlineatus	ENSSTOG00000025097	1 retrocopy	retro_itri_1014,