RetrogeneDB ID: | retro_mdom_1748 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
| Coordinates: | 7:186774657..186774921(+) | ||
| Located in intron of: | ENSMODG00000015937 | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | DYNLT3 | ||
| Ensembl ID: | ENSMODG00000021109 | ||
| Aliases: | None | ||
| Description: | dynein, light chain, Tctex-type 3 [Source:HGNC Symbol;Acc:11694] |
Retrocopy-Parental alignment summary:
>retro_mdom_1748
ATATTGGACAGTTTGGATTATAAGCAGAATAATGTCAACCAGTGGACTGCATTTAGAGTGAAACAATCCTTAACACATTT
GTTAAAGTTAGGGAAGACATATCAACCTATCGTTACTTGTTCAGTGATGCAGCGGAATGGATCTCATTTGTATACAGCCG
GCTCATGTTTTGGGGATACCACCTCTGATGGGACCTGTACTGTAAGATGGTAAAATCAAACTATGAATTGCATCATCAAT
TTTTTTGCCACGGCTACCATCCTG
ATATTGGACAGTTTGGATTATAAGCAGAATAATGTCAACCAGTGGACTGCATTTAGAGTGAAACAATCCTTAACACATTT
GTTAAAGTTAGGGAAGACATATCAACCTATCGTTACTTGTTCAGTGATGCAGCGGAATGGATCTCATTTGTATACAGCCG
GCTCATGTTTTGGGGATACCACCTCTGATGGGACCTGTACTGTAAGATGGTAAAATCAAACTATGAATTGCATCATCAAT
TTTTTTGCCACGGCTACCATCCTG
ORF - retro_mdom_1748 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 73.86 % |
| Parental protein coverage: | 75.86 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | ILGGVDYNQNNVNQWTAAIVEQSLTHLVKLGKTYKYIVTCAVMQKSGSGLHTASSCFWDTTSDGTCTIRW |
| IL...DY.QNNVNQWTA..V.QSLTHL.KLGKTY..IVTC.VMQ..GS.L.TA.SCF.DTTSDGTCT.RW | |
| Retrocopy | ILDSLDYKQNNVNQWTAFRVKQSLTHLLKLGKTYQPIVTCSVMQRNGSHLYTAGSCFGDTTSDGTCTVRW |
| Parental | ENQTMNCIVNVFAIAIIL |
| .NQTMNCI.N.FA.A.IL | |
| Retrocopy | *NQTMNCIINFFATATIL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
| SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
| SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
| SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
| SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Monodelphis domestica was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mdom_1748 retrocopy.
Monodelphis domestica was not studied using FANTOM5 data.
retro_mdom_1748 was not experimentally validated.