RetrogeneDB ID:

retro_meug_1383

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold38562:1831..2776(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:DDX21
Ensembl ID:ENSMEUG00000010586
Aliases:None
Description:DEAD (Asp-Glu-Ala-Asp) box helicase 21 [Source:HGNC Symbol;Acc:2744]


Retrocopy-Parental alignment summary:






>retro_meug_1383
CATTTGGCCATCCAGTGCCACTGGTCTCAGAGGGCAGCAGTGATTGGTGATGTCATTCAGGTCTACAGTGGAAATGACGG
GAGAGCCATCATCTTCTGTGAGACAAAGAAAAACGTGGCTGAGATGGCCTTGAATCCTCACATAAAACAGAATGCACAGT
GTTTGCATGGGGATATTGCACAGTCACAAAGAGAAATCACATTGAAAGGCTTCAGGGAAGGCAGCTTCAAAGTTTTGGTG
GCAACTAATGTAGCTGCACATGGTTTGGATATTCCTGAGGTTGATCTTGTGATTCAGAGTTCACCTCCACAGGATGTTGA
ATCCTATATCCATCATTCTGGACGCACAGGGAGAGCTGGACGAACAGGGATTTGTATATGTTTTTATCAGCCAAATGAAA
GAGGCCAGCTGAAATATGTGGAAAGGAAAAGCGGGAATAACTTTTAAACGTGTAGGTGTTCCCCACTACAATGGATTTAG
TTAAAATCTCGGAGTATGGATGCTATCAGGTCCCTGGCTTCAGTTTCTTTTGTTGCTGTTGAATTTTTCCGGCCATCAGC
TCAGAGACTGATAGAGGAGAAGGGGGCAGTGGATGCATTGGCAGCAGCATTAGCACACATCTCAGGTGCCTCCTCTTTCG
AACCTCAGTCCTTGATCAACTCTGATAAGGGATTTGTGACTATGATCCTGCAAAGTCCAGAAGAGTTACAAGACATCAGC
ACTGCTAGGAAGGAGCTGAGCAGGAAGCTGAGTAGTGACACCATGTCCCGAATTGTCCAGATGTGCCTCCTAAAAGGGAA
AATGGGTGTATGCTTTGATATTCCAACAAGTGAGTCAGAACTAATGCAGGCAGAGTGGAATGATTCAGATTGGATATTAT
CAGTGCCAGATGCGTTACCAGAATTAGAAGAATATTATGATGGGAGGAGATCGTCCAACACAAGA

ORF - retro_meug_1383 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 62.07 %
Parental protein coverage: 51.89 %
Number of stop codons detected: 0
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalHLAINCHWSQRAAVIGDVIQVYSGSHGRTIIFCETKKEAQELSLNESIKQDAQSLHGDIPQKQREITLQG
HLAI.CHWSQRAAVIGDVIQVYSG..GR.IIFCETKK...E..LN..IKQ.AQ.LHGDI.Q.QREITL.G
RetrocopyHLAIQCHWSQRAAVIGDVIQVYSGNDGRAIIFCETKKNVAEMALNPHIKQNAQCLHGDIAQSQREITLKG
ParentalFRNGKFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQKKEQHQLAQV
FR.G.F.VLVATNVAA.GLDIPEVDLVIQSSPP.DVESYIH.SGRTGRAGRTG.CICFYQ..E..QL..V
RetrocopyFREGSFKVLVATNVAAHGLDIPEVDLVIQSSPPQDVESYIHHSGRTGRAGRTGICICFYQPNERGQLKYV
ParentalER-QAGITFKCVGV-PSASEIIKAS-SKDAIRFLDSVPPAAINNFRQTAQKLIDEKGAVEALAAALAHIS
ER..AGITFK.VGV.P......K.S.S.DAIR.L.SV...A...FR..AQ.LI.EKGAV.ALAAALAHIS
RetrocopyER>KAGITFKRVGV>PTTMDLVKIS>SMDAIRSLASVSFVAVEFFRPSAQRLIEEKGAVDALAAALAHIS
ParentalGATTVEQRSLINSDVXXXXXXXXXXXXMHNIGYAR-GLKEQLGEEIDDKVTRMTFLKGKTGVCFDVPAAE
GA...E..SLINSD................I..AR..L...L..........M..LKGK.GVCFD.P..E
RetrocopyGASSFEPQSLINSDKGFVTMILQSPEELQDISTARKELSRKLSSDTMSRIVQMCLLKGKMGVCFDIPTSE
ParentalVKTFQEQWQDSRRWQLSVATERPELEQQPDEGRGFSSFR
....Q..W.DS..W.LSV....PELE...D.GR..S..R
RetrocopySELMQAEWNDS-DWILSVPDALPELEEYYD-GRRSSNTR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1383 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1383 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000137912 retrocopies
Callithrix jacchus ENSCJAG000000128761 retrocopy
Macropus eugenii ENSMEUG00000010586 1 retrocopy
retro_meug_1383 ,
Microcebus murinus ENSMICG000000151121 retrocopy
Mus musculus ENSMUSG000000200752 retrocopies
Procavia capensis ENSPCAG000000166971 retrocopy
Pongo abelii ENSPPYG000000023891 retrocopy
Tupaia belangeri ENSTBEG000000023102 retrocopies



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