RetrogeneDB ID: | retro_mmus_582 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:85790252..85791570(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ddx21 | ||
Ensembl ID: | ENSMUSG00000020075 | ||
Aliases: | Ddx21, AI255159, AL022742, D10Ertd645e, D10Wsu42e | ||
Description: | DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Source:MGI Symbol;Acc:MGI:1860494] |
Percent Identity: | 71.78 % |
Parental protein coverage: | 51.82 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 9 |
Parental | SETEKEIPVEQKEGAFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAI |
SETEK.IP.EQKE..FSNFPISEE.VKLL.A..VN..FP.Q.K.FHHV..GKDLIAQA..G..K.FSFAI | |
Retrocopy | SETEK*IPIEQKEEEFSNFPISEENVKLLRAPRVNLVFPAQVKIFHHVDRGKDLIAQAWSGPRKAFSFAI |
Parental | PLIEKLQGGLQERKRGRAPQVLVL-APTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRSGIDI |
PL.EKLQ.GLQE.KRG...QVLV...PTRELANQV.KDF.D..K.LS.ACFYGGTPY.GQI....S.IDI | |
Retrocopy | PLTEKLQCGLQEKKRGQTCQVLVQ<GPTRELANQVRKDFRDSNKMLSLACFYGGTPYRGQI**RQSRIDI |
Parental | LVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCP-H |
LVGTPG..K..LQNGKLD.TKLKHV.....DQMLD.GFADQVEEILCVAYKKD.EDNPQTLLFSATCP.. | |
Retrocopy | LVGTPGHNKENLQNGKLDITKLKHVFQHKEDQMLDTGFADQVEEILCVAYKKDTEDNPQTLLFSATCP>F |
Parental | WVFNV-AKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIG-DVIRVYSGHQ-GRTIIFCET |
WVF.V..K..M.STY.QVDLIGKKTQK..IT.EH..IKC.WT...A.IG.DVI.VYSGHQ.G.T.IF..T | |
Retrocopy | WVFIV<SKNSMRSTYKQVDLIGKKTQKSSITAEHMTIKCLWTDSTAGIG<DVILVYSGHQ<GHTTIFSGT |
Parental | KKDAQELSQNTCIKQDAQSLHGDIPQKQREITL-KGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPK |
KKDAQEL.QNTC.KQ...S..G.IPQKQREITL.K.F.NGNFGV.VATNVAA.GLDIPE.DLVVQSCP.K | |
Retrocopy | KKDAQELVQNTCMKQNVWSWLGNIPQKQREITL>KDFQNGNFGVFVATNVAAPGLDIPEIDLVVQSCPQK |
Parental | DVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRL-LDS |
D..S..H.SG.T.R.GR..VC.CFYQ.KEEYQLAQV.QKAG...K..GVP.ATEIIKASSKDAIRL.LDS | |
Retrocopy | DMQSSVHYSG*TDRDGRIEVCTCFYQHKEEYQLAQVKQKAGTTLKLMGVPFATEIIKASSKDAIRL<LDS |
Parental | V-PPTAISHFKQ-SAEKLIEEKGAVEALAA |
V..PT....F...S.EK.IEEKG..EALAA | |
Retrocopy | V<VPTVVGQFNS<STEKPIEEKGPREALAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 25 .79 RPM |
SRP007412_cerebellum | 0 .00 RPM | 28 .18 RPM |
SRP007412_heart | 0 .00 RPM | 48 .69 RPM |
SRP007412_kidney | 0 .02 RPM | 57 .17 RPM |
SRP007412_liver | 0 .00 RPM | 54 .86 RPM |
SRP007412_testis | 0 .14 RPM | 79 .68 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013791 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000012876 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010586 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000015112 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020075 | 2 retrocopies |
retro_mmus_582 , retro_mmus_662,
|
Mus musculus | ENSMUSG00000020076 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020719 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000016697 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002389 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002310 | 2 retrocopies |