RetrogeneDB ID:

retro_meug_275

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:GeneScaffold_8894:35379..35840(+)
Located in intron of:ENSMEUG00000000173
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NMRK1
Ensembl ID:ENSMEUG00000009787
Aliases:None
Description:nicotinamide riboside kinase 1 [Source:HGNC Symbol;Acc:26057]


Retrocopy-Parental alignment summary:






>retro_meug_275
GTGACAAATGGTGGGAAGACAACCCTGACCAAAAAACTCTAGAAGCAGCTTCTAAATTGCAGCATCATCTCACAGGATGA
TTATTTTAAACCAGAGTCTGGGATTAAGATGGATAAGAATGGATTTCTTCAGTATGATGTACTTGAAGCTCCCAGTATGG
AAACACTGATATCTACTGTGTACTCCTGGATGAAAAACCCAAGAAATTCCCTAGAATCAGATGACCTGGAAAGTGCTGAG
GAAGTTCCTATTTTAATCATTGAAGGTTTCCTTCTCTGTACTTATAAGCTTCTTGATACTGTATGGAATAGAAGCTATTT
TCTGACCATTCCATATGAAGAGTGCAAGTGAAGAAGAAACACCAGGGTCTATGAACCACCAGATCTTCCAGGATACTTTG
ACAGCCGTGTGTGGCCAGTGTATCTAAAACACAAAAAGAAATAGAAGACATTGCAAGGAGT

ORF - retro_meug_275 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.94 %
Parental protein coverage: 99.35 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalVTNGGKTTLAQKLQKQLPNCSVISQDDYFKPESEIKVDENGFLQYDVLEALNMETLMSSVYSWMKNPRDS
VTNGGKTTL..KL.KQL.NCS.ISQDDYFKPES.IK.D.NGFLQYDVLEA..METL.S.VYSWMKNPR.S
RetrocopyVTNGGKTTLTKKL*KQLLNCSIISQDDYFKPESGIKMDKNGFLQYDVLEAPSMETLISTVYSWMKNPRNS
ParentalPESDDLEGAEEVPILIIEGFLLYTYKPLDPLWNRSYFLTIPYEECKRRRSTRVYEPPDPPGYFDNHVWPM
.ESDDLE.AEEVPILIIEGFLL.TYK.LD..WNRSYFLTIPYEECK.RR.TRVYEPPD.PGYFD..VWP.
RetrocopyLESDDLESAEEVPILIIEGFLLCTYKLLDTVWNRSYFLTIPYEECK*RRNTRVYEPPDLPGYFDSRVWPV
ParentalYLKHR-KEIEDIARN
YLKH..KEIEDIAR.
RetrocopyYLKHK<KEIEDIARS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_275 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_275 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000053121 retrocopy
Felis catus ENSFCAG000000288231 retrocopy
Macropus eugenii ENSMEUG00000009787 1 retrocopy
retro_meug_275 ,
Mustela putorius furoENSMPUG000000123371 retrocopy
Pteropus vampyrus ENSPVAG000000061211 retrocopy
Tupaia belangeri ENSTBEG000000040632 retrocopies
Tarsius syrichta ENSTSYG000000042321 retrocopy



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