RetrogeneDB ID: retro_mputfur_634

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896928.1:13725042..13725535(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NMRK1
• Ensembl ID: ENSMPUG00000012337
• Aliases: None
• Description: nicotinamide riboside kinase 1 [Source:HGNC Symbol;Acc:26057]

Sequence

>retro_mputfur_634
ATGAAAACATTTGTCATTGGAGTTAGTACTGTGACAAATGGCAGGAAGACAACATGGCTAAGAATCTGCAGAACTACCTT
CCAAACTGCAGCATCATATCTCAGGATGATTTTTTTAAGCCAGAGTATGAGAAAGAGACAAATACAGATGGATTTCTGCA
GTATGATGTGCTTAAAGCACTCAACATGGAAAAAATGATACCCACCATTTCCTGCTGGACAAAAAGCCCAAGACACTCAC
TATTACCAACAGACTCTGTAAATGCTAAGAATTCCCATATTAATCATCAAAGGCTTCCTTCTCTTTAACTATAAGCCCCT
CGACACTCTATGGAACAGAAGCTACTTTCTGACCATTCTATACGAAGAATATAAAAGGAGGAGGAGTATAAAGCTCTACG
AGCCTCCAGACCCCCAATGTACTTTGATGGCCACATGTAGTCCAGGTACATAAAGCCCAGAGAAGAAATGGAGACATAAG
GTGGGAAACTTTA

Alignment

ORF - retro_mputfur_634 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.42 %
• Parental protein coverage: 83.42 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  MKTFVIGISGVTNGGKTT-LAKKLQKHLPNCSVISQDDFFKPQSEIETDTNGFLQYDVLEALNMEKMMSA
          MKTFVIG.S.VTNG.KTT..AK.LQ..LPNCS.ISQDDFFKP..E.ET.T.GFLQYDVL.ALNMEKM...
Retrocopy MKTFVIGVSTVTNGRKTT<MAKNLQNYLPNCSIISQDDFFKPEYEKETNTDGFLQYDVLKALNMEKMIPT

Parental  ISRWMESPRHSPVSTDSGSTE-EIP-ILIIEGFLLFNYKPLDALWNRSYFLTIPYEECKRRRSTRVYEPP
          IS.W..SPRHS...TDS.....E.P.ILII.GFLLFNYKPLD.LWNRSYFLTI.YEE.KRRRS...YEPP
Retrocopy ISCWTKSPRHSLLPTDSVNAK<EFP<ILIIKGFLLFNYKPLDTLWNRSYFLTILYEEYKRRRSIKLYEPP

Parental  D-VPGYFDGHVWPMYLKHRQEIE-NITWEII
          D..P.YFDGH....Y.K.R.E.E..I.WE..
Retrocopy D<PPMYFDGHM*SRYIKPREEME<DIRWETL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_634 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_634 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000005312	1 retrocopy	retro_amel_664,
Felis catus	ENSFCAG00000028823	1 retrocopy	retro_fcat_1087,
Macropus eugenii	ENSMEUG00000009787	1 retrocopy	retro_meug_275,
Mustela putorius furo	ENSMPUG00000012337	1 retrocopy	retro_mputfur_634 ,
Pteropus vampyrus	ENSPVAG00000006121	1 retrocopy	retro_pvam_293,
Tupaia belangeri	ENSTBEG00000004063	2 retrocopies	retro_tbel_1021, retro_tbel_4275,
Tarsius syrichta	ENSTSYG00000004232	1 retrocopy	retro_tsyr_718,