RetrogeneDB ID: | retro_tbel_1021 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3606:973..1297(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NMRK1 | ||
Ensembl ID: | ENSTBEG00000004063 | ||
Aliases: | None | ||
Description: | nicotinamide riboside kinase 1 [Source:HGNC Symbol;Acc:26057] |
Percent Identity: | 72.73 % |
Parental protein coverage: | 54.23 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | AVEIHILIIEGFILFNYKPLDTIWNRSYF-TIPYEECKRRRSTRVYEPPDPPGYFDGHVWPMYLKHRREV |
A..I.ILII.GF.LFNYKPLD.I.NRSYF.TIPYEECKR..S..VYEPPDPP.....H.WPMYLK.R.E. | |
Retrocopy | AEKIPILIINGFLLFNYKPLDII*NRSYFLTIPYEECKR--SISVYEPPDPPRVLYSHLWPMYLKNR*EM |
Parental | EDITWEIVYLDGTKSEEDLFSQVYEDLIQELAKHKCLQVS |
EDI..EIVYL.GT.SEEDLFS.VYEDLIQEL.K.K.LQV. | |
Retrocopy | EDIM*EIVYLHGTRSEEDLFSHVYEDLIQELVKQKSLQVT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005312 | 1 retrocopy | |
Felis catus | ENSFCAG00000028823 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009787 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000012337 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000006121 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004063 | 2 retrocopies |
retro_tbel_1021 , retro_tbel_4275,
|
Tarsius syrichta | ENSTSYG00000004232 | 1 retrocopy |