RetrogeneDB ID: retro_tsyr_718

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_18074:17832..18117(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NMRK1
• Ensembl ID: ENSTSYG00000004232
• Aliases: None
• Description: nicotinamide riboside kinase 1 [Source:HGNC Symbol;Acc:26057]

Sequence

>retro_tsyr_718
AATGGTAGGAAGACAACACTAGCTAAGAACTTGCAGAAACAGCTCCCAAATTGTAGTGTCCTATCTCAGGATGATTTCTA
CAAGCCATGGTCTGACATAGAGACAGATAAAAATGAATGGCTGCCGTACGATGAAGCCCTTAATATAGAAAAAATGATGC
CAGCCATTTCCTGCTGGGTGGAAAGCCCAAGACACTCTCTGGTACCAACAGACTGGTGAGGTACTGAGGAAATTCCTGTT
TTAATCATAGAACATTTTCTTCCTGTTAATTATAAGCCTCTTGAA

Alignment

ORF - retro_tsyr_718 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.2 %
• Parental protein coverage: 53.01 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NGGKTTLATNLQKCLPNCDVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESPRHSLV
          NG.KTTLA.NLQK.LPNC.V.SQDDF.KP.S.IETDKN..L.YD..EALN.EKMM.AISCW.ESPRHSLV
Retrocopy NGRKTTLAKNLQKQLPNCSVLSQDDFYKPWSDIETDKNEWLPYD--EALNIEKMMPAISCWVESPRHSLV

Parental  STNWKNAEEIPILIIEGFLLFNYKPLD
          .T.W...EEIP.LIIE.FL..NYKPL.
Retrocopy PTDW*GTEEIPVLIIEHFLPVNYKPLE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_718 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000005312	1 retrocopy	retro_amel_664,
Felis catus	ENSFCAG00000028823	1 retrocopy	retro_fcat_1087,
Macropus eugenii	ENSMEUG00000009787	1 retrocopy	retro_meug_275,
Mustela putorius furo	ENSMPUG00000012337	1 retrocopy	retro_mputfur_634,
Pteropus vampyrus	ENSPVAG00000006121	1 retrocopy	retro_pvam_293,
Tupaia belangeri	ENSTBEG00000004063	2 retrocopies	retro_tbel_1021, retro_tbel_4275,
Tarsius syrichta	ENSTSYG00000004232	1 retrocopy	retro_tsyr_718 ,