RetrogeneDB ID: | retro_tbel_4275 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_74423:3916..4273(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NMRK1 | ||
Ensembl ID: | ENSTBEG00000004063 | ||
Aliases: | None | ||
Description: | nicotinamide riboside kinase 1 [Source:HGNC Symbol;Acc:26057] |
Percent Identity: | 71.67 % |
Parental protein coverage: | 59.2 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | VTNGGKTTLAKNLQKHLPNCSVISQDDFFKXXXXXXXXXXXXXXXXXLFALNMDNMMAAVSCWRESPGHS |
VTNGGKTTL.KNLQKHLPNCS.ISQDDFFK.................L.ALNMD.MM.A.SC.RE.PGHS | |
Retrocopy | VTNGGKTTLVKNLQKHLPNCS-ISQDDFFKPESEIETD*KWILQYDVLEALNMDEMMVAISC*RENPGHS |
Parental | AVTTERGSAVEIHILIIEGFILFNYKPLDTIWNRSYF-TIPYEECKRRRS |
AV..E.GSA.EI.ILII.GF.LFNYKPLDTIWNR.YF.TIPYEECKRRRS | |
Retrocopy | AVSKEWGSAEEIPILIIKGFLLFNYKPLDTIWNRNYFLTIPYEECKRRRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005312 | 1 retrocopy | |
Felis catus | ENSFCAG00000028823 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009787 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000012337 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000006121 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004063 | 2 retrocopies |
retro_tbel_1021, retro_tbel_4275 ,
|
Tarsius syrichta | ENSTSYG00000004232 | 1 retrocopy |