RetrogeneDB ID: | retro_mluc_31 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429936:2094443..2095946(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000025240 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GMCL1 | ||
Ensembl ID: | ENSMLUG00000009183 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.87 % |
Parental protein coverage: | 85.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PESETDEEEEEGDEQQRLLNTPRSRKKLKSTSKYIYQTLFLNGENSDIKICALGEEWSLHKIYLCQSGYF |
PE.E................T....KK.K.TS.Y.Y.TLFLNGE.SDIKI.ALG..W.LHK.YLCQSGYF | |
Retrocopy | PEAENSPNPLDPEDNLQQEATTSRSKKMKVTSDYAYRTLFLNGETSDIKIRALGRVWCLHKMYLCQSGYF |
Parental | SSMFSGSWKESSMNIIELEIPDQNIDVEALQVAFGSLYRDDV-LIKPSRVIAILAAACMLQLDGLIQQCG |
...F..S...S...II.LEI.D.NIDV..L....GSLY.....L........ILA.AC.LQ...LI..C. | |
Retrocopy | ATLFKNSCDDSDKDIIDLEIKDHNIDVASLNFVLGSLYGGEYDLTESLQIPRILATACLLQVEDLIEECE |
Parental | ETMKETINVKTVCGYYTSAGTYGLDSVKKKCLEWLLNNLMTHQNVELFKELSINVMKLLIGSSNLFVMQV |
ETMKE..NVKTVCGYY..A..Y.L.S.K.KC..WLL.NLMTH.NVEL.K.LSI..M.LLI.S.NL.V.Q. | |
Retrocopy | ETMKEAVNVKTVCGYYATAEAYELESLKTKCFNWLLHNLMTHPNVELYKALSIELMNLLISSANLLVIQK |
Parental | EMDVYTALKKWMFLQLVPSWNGSLKQLLTETDVWFSKRKKVDFEGMTFLETEQGKPFVSVFRHLRLQYII |
E.DVYT.LK.WMFL.L.P.W.GS.K.LL.....WFS.R.......M.FLET..G.PF..VF..LR.Q.II | |
Retrocopy | EIDVYTTLKEWMFLRLNPAWKGSVKKLLSHANKWFS-RHRGRVASMAFLETRRGIPFQLVFKNLRFQHII |
Parental | SDLASARIIEQDSLIPSGWLSSVYKQQWLAMLRAEQDSEVGPQEINKEELEGNSMRCGRKLAKDGEYCWR |
.DLAS.R.IE.D.LIPS.WLS..YKQQW...LR..Q..E.GP...N..ELE..SMRCG..L.K.G...W. | |
Retrocopy | CDLASTRVIEHDTLIPSHWLSQAYKQQWFTLLRVRQSQEIGPRYTNEIELEEYSMRCGKMLVKKGKFSWK |
Parental | WTGFNFGFDLLVTYTNRFIIFKRNTLNQPCSGSVSLQPRRSVAFRLRLASFDSSGKLICSRTTGYQILTL |
W.GFNFGF.L.V..T...IIFK.N.....C.G.V.L...R..AFRL.L..FDSSG.L..S.TTGY..LT. | |
Retrocopy | WSGFNFGFPLHVIFTSDYIIFKQNIFPHSCAGPVCLRSLRNIAFRLTLVYFDSSGNLRFSKTTGYKTLTF |
Parental | EKDQEQVVMNLDSRLLIFPLYICCNFLYISPE |
..D.E..VMNLDS..L.FPLYI.CNFL..S.E | |
Retrocopy | QNDEEHLVMNLDSKSLSFPLYIFCNFLFTSLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016116 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012306 | 2 retrocopies | |
Equus caballus | ENSECAG00000016813 | 2 retrocopies | |
Homo sapiens | ENSG00000087338 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002565 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000009183 | 2 retrocopies |
retro_mluc_1521, retro_mluc_31 ,
|
Macaca mulatta | ENSMMUG00000000858 | 1 retrocopy | |
Mus musculus | ENSMUSG00000001157 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010132 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015808 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000008408 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012334 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012021 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000001242 | 3 retrocopies | |
Sorex araneus | ENSSARG00000004651 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008335 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000714 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007493 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000001756 | 1 retrocopy |